BGI-Qingdao TGS-GapCloser issues

BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.

GNU General Public License v3.0

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issues

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-g_check flag

#35 KyleEwart closed 3 years ago
1
Rework flow of --ne option

#34 NTNguyen13 closed 3 years ago
2
run time too long

#33 zhoudreames closed 3 years ago
3
paf file from minimap2

#32 wyim-pgl closed 3 years ago
1
Candidates fragments of corrected reads as input

#31 zhixue closed 3 years ago
2
Update TGS-GapCloser.sh

#30 NTNguyen13 closed 3 years ago
0
samtools sort: couldn't allocate memory for bam_mem

#29 NTNguyen13 closed 3 years ago
5
TGSCandidate killed

#28 NTNguyen13 closed 3 years ago
11
TGSGapCandidate crashes in pipeline

#27 andreott closed 3 years ago
1
Genome size bigger than before gap-filling.

#26 sunnycqcn closed 3 years ago
2
Error in Minimap2 path in conda in the main script (conda install)

#25 agroppi closed 3 years ago
1
Use of HiFi reads of the PacBio Sequel Systems ?

#24 agroppi closed 3 years ago
5
Arg input_scaff is not assigned !!!

#23 edeyneka closed 3 years ago
13
Question about fasta.gz file

#22 deilepaita closed 3 years ago
4
preassembled contigs

#21 lurebgi closed 3 years ago
1
Running TGS in conda

#20 desmodus1984 closed 3 years ago
5
Is it possible to continue a crashed run?

#19 dabitz closed 3 years ago
5
how to get scaffolds?

#18 bestweicheng closed 4 years ago
2
TGS-GapCloser.sh: line 381: syntax error near unexpected token `('

#17 dabitz closed 4 years ago
1
some questions about TGS-GapCloser

#16 longzhangnation closed 4 years ago
4
Exception in thread "main" java.lang.IllegalArgumentException: requirement failed

#15 farhan-phd closed 4 years ago
3
extend contig ends

#14 christinawu2008 closed 4 years ago
2
How to use paired end reads ?

#13 biozhangzhou closed 4 years ago
1
Racon polishing correct?

#12 schellt closed 4 years ago
2
Default minimap2 parameters

#11 schellt closed 4 years ago
2
TGS-GapCloser dies

#10 dcopetti closed 4 years ago
5
Candidate aborts with an error

#9 felixgrewe closed 4 years ago
3
minimap2 ava-ont option

#8 dcopetti closed 4 years ago
3
TGSGapCandidate is not exist

#7 dcopetti closed 4 years ago
4
read-correction crashes

#6 dominik-handler closed 4 years ago
2
How to understand the unexpected gap closed output?

#5 cai1991 closed 4 years ago
2
TGSGapCandidate 'std::out_of_range' what(): map::at

#4 lurebgi closed 4 years ago
1
installation error: /usr/bin/ld: cannot find -lminimap2

#3 lurebgi closed 4 years ago
0
Error in ParseAllGap

#2 mzahm closed 5 years ago
2
Create LICENSE

#1 cchd0001 closed 5 years ago
0