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Dear Chi,
I am having some trouble interpreting the LEfSe results from my dataset, and was wondering if there could be a calculation error when obtaining the LDA scores. The distribution of certai…
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Hi there,
First of all, congrats for this nice tool!
I am trying to associate genera to a continuos variable, but the total count of genera is too big to be processed in a realistic timeframe. H…
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[Investigating the v2 pipeline’s human-virus assignment behavior](https://data.securebio.org/wills-public-notebook/notebooks/2024-07-01_partial-hv.html):
> As such, the script checks whether the as…
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Hello and thanks for the great package.
I am producing a heat tree matrix of differential relative abundances in fungal taxa. I would like to display differences in taxa down to the order rank, how…
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I keep seeing the presence of an unknown taxa with the name "V1" anytime I construct my taxa bar plots. However there is nothing in my taxanomy.tsv file that traces back to this "V1" taxa and it seems…
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### A clear and concise description of todo items.
- [ ] `flask metadata` cannot handle CSV entries incl. header with blank spaces, *etc.*
- [ ] `flask delete` (`FileService`) should except/…
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This example shows Reykholt having 1 analysis_entity:
But it has many more.
This is…
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https://www.checklistbank.org/dataset/298754/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nomCode&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&face…
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**Describe the bug**
`model.graph()` causes a segmentation fault when tracking `dnPhyloCTMC(coding = variable).lnProbability()`
**To Reproduce**
- Download [data.txt](https://github.com/user-a…
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Hi there,
I have run into a weird issue using phyloseq. I am working with two objects, ps1919 with 35 samples and ps1144 with 185 samples. When I merge the two, they are deleting 10 cases, since the…