wejlab animalcules issues

wejlab / animalcules

R shiny app for interactive microbiome analysis

https://wejlab.github.io/animalcules-docs/

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issues

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Unknown "V1" taxa in abundance taxa plot

#69 IdanBanson opened 2 months ago
6
Fixed reading in files from a directory that has more than just patho counts files in the directory

#68 jessmcc22 closed 5 months ago
0
Updated to reflect online documentation

#67 jessmcc22 closed 5 months ago
0
Update image location for documentation

#66 jessmcc22 closed 5 months ago
0
compiled NMDs changes

#65 jessmcc22 closed 5 months ago
0
Added documentation for diversity NMDS plot

#64 jessmcc22 closed 5 months ago
0
Corrected Select input for beta diversity NMDS covariates so that it …

#63 jessmcc22 closed 5 months ago
0
updated "compbiomed" references to "wejlab"

#62 jessmcc22 closed 6 months ago
0
NMDS passes all checks

#61 jessmcc22 closed 6 months ago
0
update devel version number

#60 jessmcc22 closed 6 months ago
0
Updated to depend on R version 4.3.0; added "glmnet" pacakge to sugsts; updated websites in description to reflect github switch from compbiomed to wejlab

#59 jessmcc22 closed 6 months ago
0
Update version number properly

#58 jessmcc22 closed 6 months ago
0
added Jessica as maintainer

#57 jessmcc22 closed 7 months ago
0
update version merge conflict

#56 jessmcc22 closed 7 months ago
0
updated deprecated aes_string to aes, corrected global variable warning;

#55 jessmcc22 closed 7 months ago
0
Updated devtools install

#54 jessmcc22 closed 7 months ago
0
BIOM file upload brings out error

#53 IdanBanson closed 8 months ago
2
Fixed BioConductor Warnings

#52 jessmcc22 closed 1 year ago
0
No species level option available

#51 nunrath opened 1 year ago
1
lazy-load database ... PathoStat.rdb is corrupt

#50 ReneKat closed 1 year ago
3
Quick fix for read_pathoscope_data()

#49 aubreyodom closed 1 year ago
1
Workflow separations & Correlation Analysis

#48 sktpndt97 opened 3 years ago
0
Update to include Workflow separations & correlation analysis

#47 sktpndt97 closed 3 years ago
0
Is Alpha rarefaction required?

#46 s6aamani closed 3 years ago
1
Updating to include Workflow separations + correlation analysis

#45 sktpndt97 closed 3 years ago
0
Incorrect options for Select Target Condition in Biomarker Analysis

#44 jarrodscott closed 3 years ago
2
Counts file - only relative abundance data

#43 davitero closed 3 years ago
2
categorized variables need to be as.character()

#42 jasonzhao0307 closed 4 years ago
0
Adjustable graph size

#41 Zinthrow closed 4 years ago
0
X11 colors in the barplots area?

#40 Zinthrow closed 4 years ago
0
Biomarker names cannot handle spaces

#39 Zinthrow closed 5 years ago
2
Import from phyloseq?

#38 cjfields closed 3 years ago
3
linux check error related to Entrez

#37 jasonzhao0307 closed 5 years ago
3
bioc

#36 jasonzhao0307 closed 5 years ago
0
Bioconductor Reviews

#35 anfederico closed 5 years ago
0
add detail explanation for each button/option in the screen shot

#34 jasonzhao0307 closed 5 years ago
4
add testthat

#33 jasonzhao0307 closed 5 years ago
0
Summary plot below error

#32 jasonzhao0307 closed 5 years ago
1
Alpha diversity plot continuous dot plot

#31 jasonzhao0307 closed 5 years ago
1
Modify tSNE (save the tSNE result to an assay)

#30 jasonzhao0307 closed 5 years ago
0
Modify differential abundance analysis

#29 jasonzhao0307 closed 5 years ago
1
add Limma to Differential abundance analysis using logCPM

#28 jasonzhao0307 closed 5 years ago
0
logCPM set to default assay for PCA

#27 jasonzhao0307 closed 5 years ago
0
modify the Boxplot in Abundance

#26 jasonzhao0307 closed 5 years ago
0
Add species level to animalcules

#25 jasonzhao0307 closed 5 years ago
0
Add a new assay dashboard sub-tab in the "Summary and Filter" tab

#24 jasonzhao0307 closed 5 years ago
0
Microbe filter modify

#23 jasonzhao0307 closed 5 years ago
0
Check/Fix summary statistics

#22 jasonzhao0307 closed 5 years ago
0
Complete docs (figures, descriptions, TOC)

#21 jasonzhao0307 closed 5 years ago
0
Add more distance metrics for PCoA

#20 anfederico closed 5 years ago
0