-
I know that "orthogroups/" is considered to be deprecated in some sense, but it is still the best description of where different orthofinder results (like individual gene trees or protein msa) actuall…
-
First, thank you for developing 'GoAWK' with great csv/tsv support!
I am trying to implement the `filter` command of `Miller` with the -H argument of `GoAWK`:
>mlr --icsv --opprint filter '$colo…
-
First of all, thanks for having me :) @marcello-deluca invited me to provide some feedback here, and I am glad to see a team here that is as passionate about biomedical KGs as us join forces! Lets get…
-
Hi!
I was trying to finetune the model on my dataset but I couldn't understand how I should structure my dataset.
I've performed all tasks mentioned in [data preparation](https://github.com/mbz…
-
#### What data file(s) does this issue pertain to?
`fusion-annoFuse.tsv.gz`
#### What release are you using?
v13-v15
#### Put your question or report your issue here.
Per the comment …
-
I thought they all got n/a's now, but found lots of files which have only 1 row, thus I assume just a header:
```
❯ wc -l sub-*/ses-*/func/sub-*_events.tsv | grep '^ *1 ' | nl
1 1 sub…
-
Hi, I want to use OrthoFinder to study orthology relationships for all genes in multiple species.
I don't clearly understand the one-to-one relationships. I think the number in OrthologuesStats_one-…
-
### Discussed in https://github.com/MannLabs/alphadia/discussions/375
Originally posted by **rednaSander** November 15, 2024
Hi,
Issue:
The software crashes when attempting to load a .spe…
-
In addition to the two existing cases (digenic and self-referential) that are flagged in the "review.tsv" file, another case of "somatic" is needed. These should be any entry that contain the word "so…
-
Presented nipoppy today and felt the doc misses a very simple how-to, so I wrote this draft.
From: https://hackmd.io/5FMXnIO7SPCf8tlwgbVSWQ
# How to run MRIQC on a BIDS dataset with nipoppy
## Requ…