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Hello,
Thank you for your wonderful product!
I am analyzing multiple datasets in parallel using a similar inferCNV code workflow. My datasets are integrated seurat objects which I have converted…
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Hi,
I'm glad that scATOMIC helped me a lot in distinguishing tumor from non-tumor cells.
However, when I ran a large dataset of 67000 cells, the following error occurred: "Cholmod error 'problem too…
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Thank you for creating such a great tool.
Does your tool work with CosMx and Xenium, not just Visium?
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Hi all,
Loving the tool and have been playing around with it. I haven't delved too far into the gsVA/ssGSEA code, so that might be addressed there. Feel free to close if you do. But my thought is, …
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![Screenshot_2023-07-18-12-28-19-47_e39d2c7de19156b0683cd93e8735f348](https://github.com/broadinstitute/infercnv/assets/42459469/aa0c64c3-1e64-439c-93a6-99eaacc5a482)
I get this picture from infercnv…
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Hi, thanks for your great work about SCEVAN!
I found SCEVAN annotated confidentNormal cells , supplied by `norm_cells` ,as 'tumor'. How should i interpret an output like this ? Since confidentNormal …
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Hey cellchat team, thanks for the great package! I have analyzed my single cell datasets separately and now am trying to compare two conditions with the merge cell chat features. I am following the di…
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Hi,
I was trying to replicate your results using same set of fastq files as your paper used.
But I failed to reproduce the same trend of results. I was wondering what specific parameters you used …
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Hello!
I have just obtained data from a TEA-seq experiment and am trying to run SCEVAN on the extracted gene expression data. I am receiving the following error:
> results
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Hi,
I've observed an inconsistency in the cell type assignments between two datasets in the repository. Specifically, the cell types mentioned in "prior_marker.csv":
`'vasculature', 'tumor cells',…
asom updated
11 months ago