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Hi,
I am trying to run the workflow for datasets of cell lines obtained with the TSO500 panel on a Nextseq 550 device.
It gives an error for the varlociraptor call stating: `Error: samples.tumor.…
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**Methods with R-packages in GitHub/CRAN/BioConductor**
[xCell - cell types enrichment analysis](https://github.com/dviraran/xCell)
_xCell is a webtool that performs cell type enrichment analysis …
Syksy updated
2 years ago
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Hi,
I am a fresh user of nextNEOpi and exciting to explore this well-built pipeline! But I met some errors when run my test dataset.
The Error:
```
Error executing process > 'fastp (Patient353…
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안녕하세요.
InfoGenomeR 이용함에 있어, 어려움이 있어 질문 사항 남깁니다.
preprocessing 과정을 실행하는데 있어서
This is mgcv 1.8-38. For overview type 'help("mgcv-package")'.
No such file or directory: /home/to/fasta/folder/hg19…
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https://mp.weixin.qq.com/s/JTD8ZmH2YYCIqcbs-97JzA
ixxmu updated
2 years ago
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Hi!
Is there a way to estimate tumor purity on Tumor-only exome samples using PureCN? I mean without having matched normals.
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https://mp.weixin.qq.com/s/B1l_-1nsnVmW-uHoqD7Dow
ixxmu updated
2 years ago
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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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https://mp.weixin.qq.com/s/OzE6J9DxebsWcmiuvq8fBQ
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/UehaaJZgARryH7P25v9wNQ
ixxmu updated
2 years ago