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Thank you so much for this incredible imputation tool! After following the steps for the pipeline for low-pass WGS on UK Biobank data, I am wondering how to interpret the quality score returned in the…
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These files have been removed from the UKB data showcase website.
- [x] Temporarily update functions to download the old files from https://github.com/rmgpanw/ukb_backup_files
- [ ] Rewrite functi…
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Hi, I use RVTESTS latest version to read the UK biobank BGEN file, a command like this: rvtest --inBgen ukb_imp_chr1_v2.bgen --inBgenSample ukb_imp.sample --pheno bmi.pheno.ped --pheno-name bmi --ou…
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Let's build up a list of data sets that might be interesting.
* [UK Biobank](http://biorxiv.org/content/early/2017/04/24/130385)
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Write a gitolite extension to implement pull requests for the private data server.
We can't use `git send-email` because we don't have a mailing list, and anyway the bulk of our data are large bina…
kousu updated
2 years ago
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We are moving `tsinfer` to expect input files in [VCF Zarr](https://github.com/sgkit-dev/vcf-zarr-spec/blob/main/vcf_zarr_spec.md) format (see https://www.biorxiv.org/content/10.1101/2024.06.11.598241…
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Stemming from Leigh Carmody’s talk on MAXO (Medical Action Ontology) at WCO-2020.
We already import some MAXO terms in COVOC.
However, there are many EFO terms in the ‘medical procedure’ branch that…
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Looks like an interesting project! I'm curious about the brain measures you'll use. Does the UK Biobank have derived brain measures like cortical thickness, or will you have to compute your brain meas…
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I'm trying to run snpnet on UK Biobank data with 340K indivs and 500K variants (pgen is only 22GB).
I use nodes with 16 cores and 128 GB RAM.
I have tried to use parameter `mem` (trying 128000, 1000…
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您好,感谢开发csMR!我对csMR非常感兴趣!
我在7.21日完全按照readme安装了csMR(目前Github最新版),在默认参数跑通example数据后,又用默认参数对BMI全染色体数据、8种脑细胞全染色体数据、全脑全染色体数据进行了测试(结局还是example的两套数据)。
但结果与原文Fig3的T2DM和CAD列有不同,具体阳性如下(P为IVW的P值):
T2DM:全脑(…