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It seems that there is, and will be a lot of spike diversity in XEC. Better gather them in one issue.
Only count for branches with more than 2 places.
GPT Model trained on August data(seqs before…
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LZ.2.1+A22994G(S:K478E)
GISAID query: A22994G,C29642T,T21738C
No. of seqs: 8(China 5(Hubei-Jingzhou) USA 2(GBW from Hong Kong) Singapore 1)
First: EPI_ISL_19299466, Hubei-Jingzhou, 2024-7-23
L…
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LF.7+T20799C+C22986T(S:A475V)
GISAID query: T20799C,C22986T
No. of seqs: 3(USA 2(1 from Belgium), Canada 1)
First: EPI_ISL_19348783, USA-TX, 2024-7-29
Latest: EPI_ISL_19427318, USA from Belgiu…
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XDY+C29466T(N:A398V)+G25166C(S:E1202Q)
GISAID query: C29466T,G25166C,G19669A
No. of seqs: 15(USA 14(NJ,ND,CT,IA,RI,TX,MN,AZ,NY,NE) Canada 1)
First: EPI_ISL_19285227, USA-NY, 2024-7-8
Latest: E…
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one usher per 50 guests is a good rule of thumb
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From branch 9 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
JN.1.4+T18453C+del21653_21655,G22599C,A27675C(S:S31del, S:R346T, Orf7a:Q94H)
I cannot decide the order.
…
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Ether address: 0xB17434167923fa5404ac6B703f1DBd85620a77F1
![aventus](https://user-images.githubusercontent.com/4171411/30006880-5945e3ce-9120-11e7-85a1-9214c0fac339.jpg)
# Purpose
Usher is the …
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1738
A new Orf9b mutation occurs under KP.3.3. Note that Orf9b mutations are not shown on usher so hard to notice.
KP.3.3+A97…
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KP.3.1.1+T22119C(S:F186S)
GISAID query: T22119C, A13121T
No. of seqs: 37(Canada 1 Ireland 8 Portugal 1 UK 7 Slovenia 1 Spain 9 Sweden 8 USA 2(NY,UT))
First: EPI_ISL_19296890, Spain, 2024-5-22
…
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Hi, I wrote an open-sourced usher analyse tool that can automatically highlight important lineages in usher-processed jsons. Hope it can help everyone find and analyse new lineages more quickly, espec…