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I would like to run QDNAseq on whole exome sequencing data (captured using SureSelect Human All Exon platform which covers about 50MB of the human exonic regions). Knowing this, how can I modify the Q…
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This issue is for generating plots for WES SNV analysis. This issue will be closed when all panels in the figures of the final paper can be regenerated using the markdown files or notebooks added to t…
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## Description
### User story
As a Veteran, I want my preferred name to display on VA.gov (e.g., auth menu) with the exact capitalization I entered, so that it doesn't look like the success message …
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Dear ascat community,
I hope my message reaches you well ! First and foremost, congrats for the great and very interesting pipeline and supported analyses for cancer research ! Currently, I'm reach…
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### Description of the bug
Hello, I am very grateful for your development of the Sarek pipeline. This pipeline has been very helpful to me in handling WGS analysis. However, I encountered an error wh…
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Issue by @Anuragksingh, moved from SciLifeLab#763
> Hello,
> I had some doubts over ascat.
> It would be really helpful if you can provide some insights about that.
> Can we use the available…
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Hi, I was wondering if this is an issue that has been seen before. I am new to facets and copy number calling so I would appreciate any help/advice.
I have been running FACETS for several samples …
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We have completely rewritten Sapporo, a WES implementation, and released it as version 2.0.0. This new Sapporo is based on WES 1.1.0 and is implemented using Python's FastAPI. We first defined types b…
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hi is there any suggestion use for WES
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Hi,
I am trying to run this tool on WES data, since thie only input file is based on VCF.
I am wondering did you ever applied this method on WES data, and how does it prefoms. Any other suggestions…