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### Description
We want to update SPM12 and CAT12 to a more recent version; it probably makes sense to update both at the same time given their interdependence, and carefully test several scenarios…
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**Description**
I'm struggling with feature extraction using the segmented CSF(Cerebrospinal fluid) as the ROI, which is a binary intensity-based segmentation mask. The bottleneck comes during the fe…
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Motivation: we want to upload the data to OpenNeuro, so we need to BIDSify them.
The magnitude data are _already_ in BIDS and are located here (internal server): https://data.neuro.polymtl.ca/datas…
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~~~
/MS088_R01_20 $ fslhd lesion_merged.nii.gz
filename lesion_merged.nii.gz
size of header 348
data_type UINT16
dim0 3
dim1 141
dim2 141
dim3 1100
~~~
MNI-Poly-AMU from SCT v3.0.1 (h…
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Hello,
I tried running this app with a standard wmc output from White Matter Anatomy Segmentation app and had the following error:
Traceback (most recent call last):
File "/N/dc2/scratch/baca…
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the ones behind https://brainlife.io/apps to go under https://github.com/ReproNim/containers/tree/master/images/abcd
- figure out where API endpoint for listing them is (@soichih?)
- while adding…
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Having A6 format ID, 150 dpi, B&W image and no skew, getting about 75% recognition accuracy.. Is there any way to increase it by reprocessing image as a preparation?
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Hi,
Thanks for maintaining SPATA2!
I have a seurat object after QC and SCT normalized, which was used for spata trajectory analysis. I am confused by the structure of spata2 object.
Q1. What infor…
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Hi, I'm trying to run the following command:
`nnUNetv2_plan_and_preprocess -d 777 --verify_dataset_integrity --verbose --clean `
This is my `dataset.json`:
```bash
{
"channel_names": {
…
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In #3299 the **segmentation ID** inside of a **template** got exposed to users via `-s-template-id`. This ID is an integer that they need to inspect the innards of a template to understand. For exampl…
kousu updated
3 years ago