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Expand the searchable fields YAML spec to also cover non-indexed fields. All manifests should be validated against this spec, and the fields schema for NNDD (and the default manifest) should be loaded…
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Error:
```
/Users/karel/.smbl/bin/art_illumina -sam -na -i "/Users/karel/.smbl/fa/Mycobacterium_tuberculosis.fa" -l 100 -rs 12345 -f 20 -o "mtb_reads/001/tmp.1" -p -m 500 -s 50.0 > /dev/null
cat "mtb…
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After upgrade to the newest version of PySam, I am getting the following error in my code:
```
TypeError in line 52 of /Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/rn…
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it looks like strain isn't always appended to genome_name even though it exists.
sometimes it is genome_id:1458472.3
sometimes it isn't genome_id:1773.214
This makes it difficult to give consistent…
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The genome is Mycobacterium africanum
Genome id: 33894.6
Strain name is MAL020148
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http://beta.patricbrc.org/portal/portal/patric/Genome?cType=genome&cId=235.14
The genome is listed on the page as "Brucella abortus" only, but when you open up the metadata you can see that it is str…
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Hello,
another request, could you please add the three process entries
"dormancy entry of symbiont in host"
DEF: Entry into a dormant state of the symbiont within the host organism
"dormancy maintena…
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Pupylation is the process by which the small protein Pup is conjugated to proteins through its C-terminus to a lysine epsilon-amino group of the target. This modification, analogous to ubiquitination …
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Actinobacteria have two layers on top of the peptidoglycan-based cell wall. Understanding "GO:0009273 peptidoglycan-based cell wall biogenesis" to be applicable to them, two new specializations (PART_…
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Hello,
I’d like to request a new GO term for Bacterial persistence.
Category: Process
Definition: Bacterial pathogen that persists in host for the host’s lifetime, characterized by a clinically lat…