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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.6.1/docs/FAQ.md**:
Yes
**Describe the issue:**
I mapped the WGS data to pangenome graph with `vg giraffe`. When calling v…
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Implement a method of summarizing the variation inside of a graph.
* Drop out small, uncorrelated variation as noise while preserving correlated variation and building them into haplotype blocks.
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Dear Panacus,
Thank you for developing such a great program.
I’m interested in testing the "Ordered Pangenome Growth Statistics" for a PGGB GFA file. However, the manual only provides guidance f…
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Hi!
I'm making some progress with GraffiTE - but running into the this broken pipe during the long-read mapping. I'm wondering if this could be linked to my read inputs, or whether there is somethi…
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**1. What were you trying to do?**
Align illumina short reads with vg giraffe to produce a gam for pack/call steps.
**2. What did you want to happen?**
I wanted a valid .gam file.
**3.…
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Hello, i tried installing the nodejs dependencies with:
`npm install`
I get:
```
npm WARN ERESOLVE overriding peer dependency
npm WARN ERESOLVE overriding peer dependency
npm WARN ERESOLVE overr…
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### Overview
Many of our past experiments were implicitly relying on the phylogenetic network having strong [homophily](https://en.wikipedia.org/wiki/Network_homophily) in order to infer sOTU-Metadat…
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First, divide the VCF file into different chromosomes, then construct VG files for each chromosome separately and perform SV (structural variant) identification. Alternatively, construct a VG file for…
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The Nature paper says that by using the software graph_peak_caller, we can do ChiP-Seq analysis on genome graphs. However, the original graph_peaker_caller paper says "Graph Peak Caller was developed …
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I was reading your manuscript (a good one btw), checked github and then noticed this sentence in your README:
> [ropebwt2] generates an incorrect data for fairly large datasets
I downloaded SRR2…