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Hello, MsFragger!
We used trypsin gold in our experiment as protein digest. We see a big difference in additional +2000 proteins when we use strycttrypsin instead of trypsin in MSFragger setup. W…
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* **PTHR ID & PTN node:**
GO:0065003 | protein-containing complex assembly | IBA with PTN000554085 , S000004695 , WBGene00004978 , S000000819 | Gaudet P et al. (2011)
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* **Sequences wi…
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Hello,
Thank you for this great tool.
I ran into this error that prevent ProteinPropeht from finishing the task. Do you have any idea how to resolve this?
System OS: Windows 10, Archit…
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Hello,
While reviewing GO:0051673 membrane disruption in another organism (see #24008), we found that some host/prey genes could be annotated to 'defense response against disruption of plasma memb…
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Hello,
Thank you for the tool. I am interested in running some files. However, am consistently running into this error. I cannot find an error message in the code that allows me to troubleshoot thi…
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Hi,
I got this issue and I wonder if you know what it might be the problem. I think it is something to do with headers because they might be longer than 16. Is there anyway to solve this without h…
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**Affected BGC: BGC0000625**
The MIBiG entry uses the same genomic sequence that is described in the reference paper, including the flanking genes `orf1-4`:
- [ ] 2. Protein_similar…
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Thanks for your reply!
**Describing the issue**
Hi! When I try to run a O-glyco search task using MetaMorpheus, the software fails to run because there is insufficient computer memory. Since our c…
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I wonder if I should suggest new terms based on the papers I'm annotating, but I need some chemistry help.
In diphthamide biosynthesis.
DPH1/2 is a catalytic enzyme that contains [4Fe-4S]2+ c…