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Hi all,
Quick question - can you explain the criteria used to determine which barplots are automatically generated in the output files? The github page says "barplots with GO annotations ranked by …
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Hi,
I am getting an error for the annotation step. BlastP/X finished successfully.
```
2020-08-07 10:54:10 CDS extracted from: TONE2019.1-Contigs.gbk
Written to file: TONE2019_cds.fasta.
…
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Hi,
In the newest release I noticed the script
`agat_sp_flag_premature_stop_codons.pl`
Running this on my gff and genome file resulted in 0 cases of mRNAs containing premature stop codons, and …
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Hi KG2team (@saramsey, @kvarforl, @ericawood) again,
I just found one more potential issue for KG2 (Sorry for reporting many KG2 issues recently). I discussed with @dkoslicki and decided to open th…
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I'm getting some very strange matplotlib errors when I try to plot gene weights...
command: plot_gene_weights(ica_data, 79)
 the argument provided to '_-l_' does not seem to be a hard cut-off for calling ORFs pseudogenes? For example, setting the cut-off at 50% returns putat…
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If the feature is a ncRNA the exon is still labelled as a CDS exon bottom left
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Traceback (most recent call last):
File "/mnt/usb/pesudogene/pseudo-finder-master/modules/../pseudofinder.py", line 30, in
annotate.main()
File "/mnt/usb/pesudogene/pseudo-finder-master/mo…