SBRG pymodulon issues - Githubissues

SBRG / pymodulon

Python package for analyzing and visualizing iModulons

MIT License

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issues

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Update .pre-commit-config.yaml - remove-pre-commit checks

#121 jtburrows closed 2 months ago
0
Experimental branch - update testenv python version for pre-commit testing

#120 jtburrows closed 2 months ago
0
Update files for pre-commit testing

#119 jtburrows closed 2 months ago
0
Update to master version

#118 jtburrows closed 2 months ago
0
Experimental branch - Update Eukaryotic functions and testing for python 3.8

#117 jtburrows closed 2 months ago
1
Fix issues in plotting functions and attempt to fix doc issues by adding jinja2 config

#116 jtburrows closed 2 months ago
0
Add additional arguments to ensure functionality in python 3.8

#115 jtburrows closed 2 months ago
0
Update with eukaryotic functions - test on experimental branch for precommit issues with blacken docs

#114 jtburrows closed 2 months ago
0
Incorporate functions to enable Eukaryotic organisms on a basic level

#113 jtburrows closed 2 months ago
0
Incorporate functions to enable Eukaryotic organisms on a basic level

#112 jtburrows closed 3 months ago
0
DIMA with more than 2 replicates

#111 meono opened 1 year ago
0
fix: allow for plotting to use sets as indexers

#110 siddC opened 1 year ago
0
[pre-commit.ci] pre-commit autoupdate

#109 pre-commit-ci[bot] opened 2 years ago
0
fix: update COG category mapping

#108 siddC opened 2 years ago
1
Update core.py

#107 avsastry closed 2 years ago
0
Need to change "precision/recall" in `compute_{var}_enrichment` functions

#106 siddC opened 3 years ago
0
[pre-commit.ci] pre-commit autoupdate

#105 pre-commit-ci[bot] closed 2 years ago
0
Added old locus tags for S. acidocaldarius to imodulondb.py

#104 kevin-rychel closed 3 years ago
1
Add seaborn pairplot

#103 sapoudel opened 3 years ago
0
Changing imodulon names throws KeyError

#102 sapoudel closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#101 pre-commit-ci[bot] closed 3 years ago
1
Updates to documentation

#100 avsastry closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#99 pre-commit-ci[bot] closed 3 years ago
1
Minor iMdb changes

#98 kevin-rychel closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#97 pre-commit-ci[bot] closed 3 years ago
0
ci: gh-actions for pypi and docker only occur on tags

#96 avsastry closed 3 years ago
0
fixed typo with bulleted lists in iMdb docs; added section links.

#95 kevin-rychel closed 3 years ago
0
Remove savefig

#94 siddC closed 3 years ago
0
Testing pre-commit.ci

#93 avsastry closed 3 years ago
0
Updated github actions

#92 avsastry closed 3 years ago
0
Updated iModulonDB code & docs

#91 kevin-rychel closed 3 years ago
0
Files oddly missing from imdb_june21, merging master in

#90 kevin-rychel closed 3 years ago
1
iModulonDB case insensitivity and created imodulondb_table variable

#89 kevin-rychel closed 3 years ago
0
Test gh-actions

#88 avsastry closed 3 years ago
0
New version of iModulonDB code

#87 kevin-rychel closed 3 years ago
0
Fix legend to compare_imodulons_vs_regulons

#86 avsastry opened 3 years ago
0
Imodulon vs regulon

#85 avsastry closed 3 years ago
3
Various plotting updates

#84 avsastry closed 3 years ago
0
create precision/recall overview plot function

#83 avsastry closed 3 years ago
0
metadata box plot: choosing which box/condition to display

#82 AnnieYuan21 closed 3 years ago
1
Fixes #46 and #80

#81 sapoudel closed 3 years ago
0
Saving and reloading model from json converts small numbers to 0

#80 sapoudel closed 3 years ago
0
create regulon_venn function

#79 avsastry opened 3 years ago
0
Add prefix to data in dot plot

#78 avsastry opened 3 years ago
0
Added test function and new logic for deciding thresholds

#77 avsastry closed 3 years ago
0
Return an error when creating ica_data object without optimization

#76 avsastry closed 3 years ago
0
fix: replace plt.gcf() with ax.figure

#75 siddC closed 3 years ago
0
IcaData iModulon Table is not properly set

#74 siddC closed 3 years ago
1
feat: add savefig option to barplot, scatterplot

#73 siddC closed 3 years ago
2
Sp dev

#72 sapoudel closed 3 years ago
0