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https://biobank.ndph.ox.ac.uk/showcase/help.cgi?cd=instances
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Installed a fresh version of polyfun yesterday, and the test_polyfun.py script would fail 1/2 way through.
That's when using rpy2 version 3.5.10.
Reverting to version 3.5.8 solved the problem.
…
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Hi there,
I am having a bit of trouble when running HDL.
When I try in the command line, I get this error:
HDL: High-definition likelihood inference of genetic correlations and heritabilities …
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https://metaresults-ukbb.finngen.fi/region/C3_STOMACH_NEUROENDOCRINE_EXALLC/23:30938566-31338566
https://results.finngen.fi/region/C3_STOMACH_NEUROENDOCRINE_EXALLC/23:30938566-31338566
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**Describe the bug**\
after the latest change
https://github.com/BiomedSciAI/fuse-med-ml/commits/911eac3b91112409e494ade8d7953d27113cb79e/fuse/dl/models/backbones/backbone_resnet_3d.py
got this err…
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I'm trying to run Saige Gene on UK Biobank's snp chip with more than 550K snps after some filtering. However, it seems like I got an error saying I do not have enough rare variants in my data. Is ther…
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* In attempting to run the latest version (v0.2.2) on a UKBB subject I get an early failure during surface creation.
The call made:
```
apptainer run --cleanenv \
-B ${WORKDIR}/bids:/bids …
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I'm getting the following error, when I tried to run the calculate LD step.
My code:
```r
# calculate LD
for (chr in 1:22) {
# Extract SNPs that are included in the chromosome
ind.chr
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Hi Sam,
I was trying to compute PRS from UKBB BGEN v1.2 files but ran into an error using PRSice v 2.3.5. Below are my commands and outputs.
```
Rscript ./PRSice.R --dir . \
> --prsice ./PRSic…
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Hi,
I was trying to follow the examples in R/Example, but was not able to download classic LTFH to source it. The webpage "https://alkesgroup.broadinstitute.org/UKBB/LTFH/" shows some error, and I …