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hello,
I am trying to install qiime2 after installing micromamba following the books instruction but i keep in getting errors.
should i remove micromamba and install minoconda instead?
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I do understand that what you call a TSV-formatted (classic) table is *not* considered to be a BIOM format file, but the behaviour of ``biom validate-table`` given such a file is not ideal.
I would…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
Hi, thank you for a great tool!
I am getting: AttributeError: 'DataFrame' object has n…
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Hi, I'm wondering if you can help me.
I am trying to install grimer as a conda environment on my local university cluster using mamba.
Initially I had a problem with the version of R, so created an …
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Quoting ``table.py``, both methods ``to_json`` and ``to_hdf5`` use the following:
```python
date = '"date": "%s",' % datetime.now().isoformat()
```
Using a live date means otherwise reproducib…
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I consider this low priority, but probably an easy fix.
# Observed behaviour
Attempting to use ``biom head -n 0 ...`` and/or ``-m 0`` both fail with an ugly traceback ending ``IndexError: n cann…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MicrobialGenomics-IrsicaixaOrg/dar
Confirm the fo…
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Current behaviour having used conda/pip to install biom 2.1.14 and h5py 3.8.0 on macOS, and then deliberately removing h5py:
```
$ python -c "from biom.util import HAVE_H5PY; print(HAVE_H5PY)"
Tr…
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Hi all,
I am quite new to biomod2 I want to create a model with several variables for one species. My variables are all spatial data (tif raster files). I have only presence data for my species oc…
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From the current master branch, on macOS, multiple deprecations (cross reference #908 which was just the most obvious one until now):
- [ ] pytest entry point
- [ ] C code using deprecated NumPy A…