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Hi Ian,
Thanks for making this great tool available!
I've been able to get this running in a Singularity container on my machine, but I would like to have output in GenBank format (I can't find an…
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`vsearch --orient` can accept FASTQ as input (and also output via the `--fastqout` option). Ideally, `orient-seqs` (which is just thinly wrapping `vsearch --orient`) could do the same.
This would r…
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**Snakemake version**
5.32.0
**Describe the bug**
When accessing the same checkpoint from multiple rules, the pseudo `input` is not reliably replaced with the output of the checkpoint function…
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Hi @zwanli ,
Considering issue https://github.com/bgruening/galaxytools/issues/507 , we can think of extending RNAsnp and remuRNA wrappers to support multi sequences and snp-tags, e.g. support two ty…
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Use Regexp to analize fasta format
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This is one problem I stumbled some days ago. A specialized reader for FASTA/FASTQ files might be useful, instead of parsing through other ways and then loading into a DataFrame.
Possible problem is …
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Hi there,
I've made a small prototype Nextflow pipeline to run Augustus in PPX mode with custom protein profiles, via Docker or Singularity:
https://github.com/photocyte/luciferase-PPX-predictor-n…
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Hi,
So I recently pulled the Singularity image of PAV `2.4.2.1` which I have used in parallel on a "large" number of assemblies. All the jobs eventually failed after some time so I restarted it on …
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Hi,
Regarding the @tropfenameimer comment on the build of Gallus gallus cisTarget database issue #4, I tried to take similar steps for building pig cisTarget database.
First, I got the regulato…
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hi, i ran into a similar issue as https://github.com/soedinglab/hh-suite/issues/337 and https://github.com/google-deepmind/alphafold/issues/661. i have also tried -db_preset (as suggested in #661) but…