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My assembly size is close to the expected genome size. Does it indicates that consensus contigs have been created so that I'm losing the diploid polymorphisms?
Should it be then necessary to resolv…
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Hi, I am assembling a plant genome of estimated size 2.5 Gbp.
I am testing different assemblers on a subset of my data (2 paired-end lanes ~27 GB, and 1 MP library ~3 GB).
I have previously test…
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Hi!
I have an error message when running `polish_clusters` (`spliced_bam2gff` and `cluster_gff` worked fine):
> polish_clusters: 10:41:12 Polishing cluster 8066429e-3347-4dbd-b47b-594085368984 o…
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Hello!
I managed to fix the disk space error I had a week ago, and at the start of the assembly, I got an error when the program tried to convert reads to binary format in one of my libraries.
T…
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Hi,
I am trying to build masurca 3.3.3 from the release provided on github.
When running the install.sh script, I get lots of error messages:
```
++ pwd -P
+ ROOT=/cluster/apps/gdc/masurca/…
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Hello, could I use multiple assemblers like Masurca, Abyss etc, concat their contigs into one file and then use Ragout mapping this final file to the reference? Are there advantages to this approach? …
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Hello,
I realise that might be a Docker question rather than a deepvariant one.
I am unable to run deepvariant from within a bash script, however it works perfectly well at the prompt.
```
O…
ghost updated
5 years ago
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Hello,
I am trying to launch Clairvoyante with a reference vcf. I get the following error
```
GetTruth.py: error: unrecognized arguments: --noGT 1
Loading model ...
Traceback (most recent call…
ghost updated
5 years ago
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Hi @alekseyzimin ,
I ran Masurca on an isolated node (1TB RAM, 10TB disk space). The output and list of the files produced have been attached. After running for about 2 days and constructing super-…
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Hi,
I am running Trinity De Novo (v2.8.4 --SS_lib_type RF) and noticed that I have >5000 instances of NON_FATAL_EXCEPTION's in my log file (See the three different types below).
Since these are n…