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One page 5 of the spec doc we say:
It is expected that the common sequence database format will be used to capture requirements specified in MIAPE MSI. However, the format does not enforce MIAPE co…
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[55merge_omssa.mzid.zip](https://github.com/HUPO-PSI/mzIdentML/files/1281429/55merge_omssa.mzid.zip)
@germa
Hi Gerhard,
When I used MzIdentML validator to valid the attached file, I got the …
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Hi,
I'm having a issue with the msgf2pin converter that I've not come across before, involving duplicate values.
The error is:
XML parser error at C57_F_1_target.mzid:2026098:166
error: elemen…
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I am trying to run ursgal on my ubuntu EC2 machine on AWS. I am using python3.6.
I get this error when I run `python install_resources.py`:
```
Executable for mzidentml_lib_1_6_11 is not availa…
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Hi,
I am running into some difficulties when handling custom modifications in SearchCLU and PeptideShakerCLI. After looking around at ModificationsCLI a bit, I wasn't able to figure out how to wor…
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Hi Gerhard,
When I run the validator on mzIdentML v1.2 files, the following warning messages were given:
> Message 1:
> Level: WARN
> --> unanticipated terms for XPath '/MzIdentML/Seq…
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The second line of mzid file exported from Peaks Studio 8.0 is a comment read as:
.
However, the validator reports the file 'is not a mzIdentML file.‘
The logic of the codes lies in makeBasicXMLFi…
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We do not support mzIdentML files which referencing raw files
http://www.ebi.ac.uk/pride/help/archive/faq#mzid-with-rawfiles-only
This should be checked for and prevented at the time of making a 'comp…
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As spotted by Andrew C and Gerhard, there are a few issues (mostly in the spec doc) relating to SearchDatabase and its cvParams, which need to be resolved. We should put out a minor update on the spec…
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I have a few questions with mzIdentML 1.2 and cross-linking implementation. I have also been using the validator to try to understand what is going on when implementing 1.2 on cross-linked database se…