-
-
The 'highest peaks' example does not scale well with higher distances, resp. more peaks, as more and more distances have to be calculated. A different approach would be to order all peaks in the curre…
plepe updated
9 years ago
-
I guess we could use more vivid orange color for peaks.
Example of multiple peaks in forest:
http://www.openstreetmap.org/#map=13/49.2519/19.8495
but it's also hard to notice on borders, even…
-
> Want to investigate the multiple peaks thing? Simulate one set of
> data, start a bunch of optimizations from different starting points?
> You'll have to make sure the scaling parameters are reason…
-
Hello,
I am analyzing 10x multiome data and looking to aggregate macs2 called peaks so I cannot use the 10x-generated feature_linkage.bedpe file to aggregate peaks. As suggested in a previous [post](…
-
I'd like to call NFR only peaks for a pair-ended dataset. I'll try to limit the fragments to 150 bp. I could use "-I 150" option with Bowtie2, or filter the
-
**Links:**
https://www.wowhead.com/quest=12865/loyal-companions
https://www.wowhead.com/npc=29816/eagle-feeding-kill-credit
https://www.wowhead.com/item=41340/fresh-ice-rhino-meat
**What is happ…
-
**Describe the bug**
Some peaks in *.gappedPeak overlap.
**To Reproduce**
The following two peaks overlap in example output `65283_chr22_peaks.gappedPeak`:
```
chr22 37484220 37485340
chr22 …
-
thanks for this package!
i'd suggest providing links to these alternatives in your README and differentiating your features from them. or join forces to provide the ultimate peak finder!
https:…
-
Hi,
I used the project pipeline of PEPATAC to create consensus ATAC peaks for my samples.I get the combined summary stats for all samples (PEPATAC_tutorial_stats_summary.tsv). However, the pipelin…