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There's a JG.3.2 sublineage in Canada that is defined by a Spike insertion S:212insERY only - there's no defining SNP compared to JG.3.2 unfortunately.
GISAID query: `ins214YRR`
It seems to be n…
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JN.2.1+T22926C(S:L455S)
GISAID query: T22926C,C21654T,A2127G,-4921(edited)
No. of seqs: 2(UK 1 Sweden 1)
EPI_ISL_18507416, Sweden, 2023-11-4
EPI_ISL_18525666, UK, 2023-11-9
[usher](https://…
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Hi,
Thank you for developing such a wonderful tool.
I have faced a issue when I running the germline variant calling part of your tutorial. Actually I have succeeded running chromosome 1 and 20 fro…
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Hello interested contributors! Welcome to the `covid19-review` project. Our goal here is to provide an up-to-date perspective on the current peer reviewed and preprinted literature around diagnostics …
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### Type
Course
### Description
COURSE OVERVIEW
This course will introduce biologists and bioinformaticians to the field of single-cell RNA sequencing. We will cover a range of software and analys…
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#### What data file(s) does this issue pertain to?
histologies, fusion files
#### What release are you using?
v12
#### Put your question or report your issue here.
```r
> v12 %>%
+ …
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Other than sequencing_experiment, the following schemas will also need to be updated to reflect the changes for targeted-seq and wxs if applicable.
- sequencing_alignment
- qc_metrics
- variant_ca…
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In your experience, how well does COMPASS detect CNA gains in regions containing only heterozygous germline SNPs? Assuming the sample contains no somatic mutations.
After re-reading your paper, I' a…
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Hi Felix,
After performing my alignements with bismark, I get mapping efficiencies around 25-30 %.
I had read some post where you said that the error could come from the paired end library. So I…
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# Statement of problem
Datasets are being reorganized to support dynamic pipeline assignment--aka "soft assay type".
[Reference](https://docs.google.com/spreadsheets/d/1aCcGFoTWrBEb2ncN4XiV6rcT…