x-atlas-consortia ubkg-neo4j issues

x-atlas-consortia / ubkg-neo4j

A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j

MIT License

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Explicit shutdown of neo4j service in Docker container

#60 AlanSimmons closed 4 minutes ago
0
Port generation of UBKG distribution to Linux VM

#59 AlanSimmons opened 3 weeks ago
0
To Index or Not to Index

#58 yuanzhou opened 1 month ago
1
Update to newer version of Neo4j base image

#57 yuanzhou opened 1 month ago
0
Shirey/update to 5.x

#56 yuanzhou closed 1 month ago
0
Added check on relationship labels containing colon

#55 AlanSimmons closed 1 month ago
1
Optimize compression of neo4j database

#54 AlanSimmons closed 1 month ago
0
Ensure v5 Docker will work as a service

#53 shirey closed 4 months ago
0
Synchronous index creation

#52 AlanSimmons closed 5 months ago
0
Index creation changes

#51 AlanSimmons closed 5 months ago
0
Update the Data Distillery context

#50 AlanSimmons closed 3 weeks ago
0
Update base context for UBKG.

#49 AlanSimmons closed 3 weeks ago
0
Enforce naming rules for relationship names

#48 AlanSimmons closed 3 weeks ago
1
Remove CREATE INDEX FOR (n:Definition) ON (n.DEF)

#47 AlanSimmons closed 6 months ago
0
Remove index on DEF property of Definition nodes

#46 AlanSimmons closed 6 months ago
1
Add heart, thymus, bone as organs in SenNet; lymphatic vessel in HUBMAP

#45 bhonick closed 6 months ago
7
Removed CREATE CONSTRAINT commands for ATUI, SUI; Removed CREATE INDEX for relationship indexes

#44 AlanSimmons closed 6 months ago
0
Refactoring of v5 architecture

#43 AlanSimmons closed 6 months ago
0
Remove problematic constraint checks in v4 Docker image in Docker Hub

#42 AlanSimmons closed 6 months ago
1
Update UBKG base context with UMLS2023AB release

#41 AlanSimmons closed 3 weeks ago
0
Enhancements to support "soft assay type": "Dataset Type" hierarchy

#40 AlanSimmons closed 3 weeks ago
4
New Dataset: Kaggle-1 Glomerulus Segmentation

#39 AlanSimmons closed 3 weeks ago
3
Add nodes for Provenance Entity hierarchy in HUBMAP ontology

#38 AlanSimmons closed 3 weeks ago
0
Add GeoMX to list of Data Types in HuBMAP

#37 bhonick closed 3 weeks ago
2
Add "bone marrow" as organ to SenNet

#36 bhonick closed 3 weeks ago
1
Add dataset nodes for new HuBMAP assay types

#35 AlanSimmons closed 3 weeks ago
3
Support for multi-assays: changes to neo4j content

#34 AlanSimmons closed 3 weeks ago
0
New generation of Data Distillery

#33 AlanSimmons closed 3 weeks ago
0
HuBMAP: UBKG support for new "soft" assay types

#32 AlanSimmons closed 7 months ago
1
Change import script to account for removal of SUI

#31 AlanSimmons closed 10 months ago
2
Docker version for Neo4j 5.x

#30 shirey closed 9 months ago
0
Upgrade UBKG architecture to version 5 of neo4j

#29 AlanSimmons closed 3 weeks ago
0
Add 10x Multiome to Available Data Types (HuBMAP + SenNet)

#28 bhonick closed 9 months ago
10
Update to neo4j 4.4.24 and add ability to leave db in read-write mode

#27 shirey closed 1 month ago
0
Create Docker image with neo4j v.4.3+ and relationship indexes

#26 AlanSimmons closed 10 months ago
2
Not able to install Data Distillery on a MoTrPAC MacBook Pro M2

#25 AlanSimmons closed 4 months ago
4
Duplicate definitions if multiple codes mapped to same CUI

#24 AlanSimmons closed 10 months ago
5
Replace field_assays.yaml with UBKG

#23 AlanSimmons closed 3 weeks ago
0
Replace field_entities.yaml with UBKG

#22 AlanSimmons closed 3 weeks ago
0
Replace field-types.yaml file with UBKG

#21 AlanSimmons closed 3 weeks ago
0
Replace field_descriptions.yaml in ingest-validation tools with UBKG

#20 AlanSimmons closed 3 weeks ago
0
VM deployment of Data Distillery

#19 AlanSimmons closed 6 months ago
0
Add placenta and pancreas as organs

#18 bhonick closed 3 weeks ago
9
Kept new node indexes; backed out relationship indexes

#17 AlanSimmons closed 9 months ago
0
jas_new_indexes

#16 AlanSimmons closed 1 year ago
0
New indexes in set_constraints.cypher; bumped version

#15 AlanSimmons closed 1 year ago
2
Add relationship indexes on SAB property to allow identification of all data from a set of assertions

#14 AlanSimmons closed 10 months ago
4
Ability to run Neo4j from container as https

#13 shirey opened 1 year ago
0
Startup script option to pull properties from config file

#12 shirey closed 6 months ago
1
associate HuBMAP and SenNet assays with analytes from metadata.tsv

#11 AlanSimmons closed 9 months ago
1