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Hi,
First, thanks for the great tools, I use Tabix/Bgzip extensively in my work and am very grateful for the continued support of you folks continuously making them better (especially the extension…
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Recently encountered a case that hit this error.
`sambamba-sort: Error reading BGZF block starting from offset 0: stream error: not enough data in stream`
In this step:
call-somaticExome -> som…
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Hello,
I am having some trouble installing Demuxlet on my Mac. I followed the instructions step by step by README2.md and everything was ran fine until I was trying to run $make after I downloaded …
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Given #40 has a new BAMv2 as an option, we should start thinking about what else may be suitable to add. Some ideas to get the ball rolling.
1. A minor version number. Both major and minor are fo…
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Hi, I have met problem when I installed minimac4 . the command I used as follow:
/home/rw/guanglinHe/software/anaconda3/bin/cget install -f ./requirements.txt #-- Installing:/home/XiaominYang/bio…
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PR #1772 added a simplified inline version of `bgzf_read()` that uses inline code when the request can be satisfied directly from the buffer, otherwise punts to the real `bgzf_read()`. Very laudable. …
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Hello there,
I have used Amplicon suite on one cohort and it detected eccDNA in 6 out of 23 samples. Next I wanted to try it on another cohort with tumor-normal paired fastq files, but I have not yet…
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For large catalogs, it would be nice if trgt genotype / validate commands could read a compressed BED file.
Currently, they both exit immediately without generating an error.
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This is possibly related to https://github.com/samtools/htsjdk/issues/1162, but I see issues with BAM too so this is not entirely a CRAM problem. I think it's a generic index related thing, which is …
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Is there a way to install this tool on a mac osx?
brew install brewsci/bio/mosdepth
==> Installing mosdepth from brewsci/bio
mosdepth: Linux is required.
Error: An unsatisfied requirement faile…