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Hi there,
I am greatfully using the `plot_ordination()` function, but would like to set the transparency of the points in the PCoA plot (by using e.g. `alpha = 0.5`). As `geom_point()` is already …
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**Is your feature request related to a problem? Please describe.**
With the removal of taxa plots on continuous variables, we may have reached a place where there are no typical runtime errors in the…
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Hi @sbslee,
Can you add some codes to make alpha (Shannon, observed and evenness) and beta (Bray-Curtis and Jaccard index) with some plots from a normal text file?
If someone is not using qiime or…
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Hello again!
I was curious to know if a performance problem that I'm having could be due to an issue in the package, or if I should do things differently considering the data that I have to deal wi…
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Hi,
I'm pondering about the `BinGroup `parameter, and wonder whether a larger amount of smaller groups, or rather a few large binning groups would be preferable, and what the difference would be on…
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Hi,
Dokdo has been very useful for me, and thanks again for the v1.10
I was wondering is there any way to control the color codes for specific bacteria and the order in the bar.
I have two differ…
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Hi! Dear ampvis2 delevopers,
I received important helps from this package for a long time. Thank you so much for this wonderfule package.
Now I'm able to plot PCoA based on bray method of hellinger …
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We should consider adding phILR transformation to `mia`
This is phylogeny-aware transformation that additionally requires a tree. It has been successfully used in some recent studies.
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I am pretty new to R, but thanks to Phyloseq, atleast I don't dread it anymore :)
I am learning Phyloseq using output files generated by QIIME. While working with the ordinate plots section, I saw te…
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https://mp.weixin.qq.com/s/8kqTVSDjuHpivGaim6ukNg
ixxmu updated
2 years ago