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Hi, I would be grateful if you could clarify the following points regarding LINCS data:
1. The [README](https://github.com/theislab/chemCPA/tree/main/preprocessing) file mentions that you used data f…
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The dynamics parameters are the defaults of specific classes (DynamicsParameters, MEVPParameters, and MEBParameters if memory serves). These must, however, be configurable by the user through config f…
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Hi there! I have several questions regarding the `oracle.suggest_mass_thresholds()` function.
1. What are the criteria to choose the appropriate `min_mass parameter value` for cell identity from a …
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roachtest.perturbation/metamorphic/addNode [failed](https://teamcity.cockroachdb.com/buildConfiguration/Cockroach_Nightlies_RoachtestNightlyGceBazel/17470843?buildTab=log) with [artifacts](https://tea…
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Hello, I hope you're well. I went through your paper and supplementary material to understand how a strategy network generates attack types. My understanding through code and architectural diagram is …
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### What would you like to report?
Mostly a note to myself/Andrew to take care of this at some point - for both NewtonNet and Q-Chem (and really this is a general recipe), quasi_irc_job should be usi…
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Initial thoughts by @marvinschmitt:
> Minimal content would be examples of ECDF plots for
> - bias too high
> - bias: too low
> - overconfident
> - underconfident
Alternatively, I suggest that we si…
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I don't have a GPU with over 45GB.
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(Stubs for now, so we can add this documentation to code later)
Percent strong is reported in two ways. We should distinguish between these ways of reporting (they are similar but not the same)
…
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### Report
Hello,
When running the lda visualisation plot as part of the mixscape workflow, I am not getting consistent results between runs, the plot looks slightly different (although very simil…