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Hi,
When I run or rerun speciesprimer (on a docker container with 15.51 gb RAM allocated to it) a single results file is not successfully created. I can not determine from the logs what the problem…
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Hi,
thanks for this tool, already incorporated it into one of our pipelines. That said, I think it currently does not output an assembly statistic file, like Spades does? This would be useful espec…
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Hi
I installed WUB from conda but none of the tools are working and throwing me an error as some libraries have been removed from bioconda. is it possible that you could update it?
conda 4.10.0
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`bcftools concat` is called on lines 1120, 1131, 1456. When running the tutorial using Eagle for phasing, one sample is excluded (by Eagle) on Chr9 due to high missingness (> .1). When `bcftools con…
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Hi,
Whenever I run the pipeline, an error always occurs with Shovill.
When I check the .nextflow.log file, I see the following message:
10:40:30.287 [Task monitor] DEBUG nextflow.processor.Task…
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##### Project link
https://github.com/orgs/geneontology/projects/TBD
##### Project description
Currently, the only information that can be carried by the GPI format is whether or not an identif…
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Is it possible to pass in an existing Seurat object (or converted SingleCellExperiment object)? I have a pretty robust pipeline that does QC, clustering and such, would like to have some level of pres…
bc2zb updated
3 years ago
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## Complication
Genotype and covariates are possibly shared across all studies and phenotypes are unique to each one. Sometimes the overlap is large and the few non-overlapping samples are negligib…
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Roberta -> These are the steps I'm currently looking for in the TEROS manual QA/QC process. They can help create an automated pipeline for simple flag L1.
- [ ] Identifying SWC values below 0.1. T…
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I just wanted to leave a note here for discussion, because I imagine it will come up at some point, particularly if @andesha decides to implement pylossless on the clusters.
Since we are using `dash-…