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- https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq
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Nextflow currently uses single `-` prefix for command level options and `--` prefix for the definition of user workflow parameters.
Users frequently do not realise the difference and use the `--` …
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Nextflow has a feature, `fromSRA` or SRA channel factory, to enable download of data from the SRA archive:
* blogpost: https://www.nextflow.io/blog/2019/release-19.03.0-edge.html
* documentation: …
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We provide it on assembly, so I think we should provide it on the services where our users would like to see it (RNA-Seq, Variation, Metagenomic Binning).
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I got the nextflow pipeline to run, but it immediately throws an error.
It seems that the `droptag` tool cannot read the FASTQ files.
Do you know what might be the problem?
When I `cd` into t…
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BRAKER3 fails to execute with the following message:
```
ERROR in file /home/panos/Programs/BRAKER/scripts/braker.pl at line 5474
Failed to execute: /usr/bin/perl /home/panos/Programs/GeneMark-ET…
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Thank you @christinehou11 for this great package! One question I had was if we could make the names of the columns uniform? For example, I noted we have `dataset_type` (it does not end in an s) and `d…
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Dear the authors,
Thanks a lot for your valuable and user-friendly software. I have tried the finder programe to annotate the example arabidopsis thaliana genome, but found the proteins extrated f…
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Hello!
Thanks for your work and beautiful paper.
I have a question on how to better run Compass on my dataset (T cells). Basically, I have a scRNAseq dataset (10x) that has been analyzed (normali…
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## Bug report
(Please follow this template replacing the text between parentheses with the requested information)
### Expected behavior and actual behavior
nexflow runs without error
### …