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Hi all,
First of all thank for an amazing tool, I have been using Flye quite successfully for assembly mammalian genomes using relatively low coverage PacBio reads (~30X). However, recently I tried a…
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Proposer un outil pour le calcul de l’indemnité de licenciement
- tag "300" : **indemnité de licenciement**. ( L1234-9 **R1234-5**; L1234-9; L1234-10; L1234-11; **R1234-2**; **R1234-1**; **R1234-…
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Genome @ https://github.com/RobertsLab/resources/wiki/Genomic-Resources#genome-1
sr320 updated
6 years ago
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Use RepeatMasker to ID TEs from draft Oly genome.
Note Sean developed pipeline and ran on old version of genome...
https://genefish.wordpress.com/?s=%22transposable+elements%22
sr320 updated
6 years ago
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Hi there
Thanks for developing this great tool for annotation!
I am trying since a bit to annotate a non-model organism genome (orchid bee, >500Mb assembly, rather fragmented, i.e. lots of small…
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GENOMICS
- [ ] Region ==> Sequence
not totally sure if it's possible using a template query, but I think this one would be best done with the Regions pane
- [x] Region ==> Contained …
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How could you use alignment data (and samtools) as well as bedtools in your own project?
Provide a least one example of what said code might look like.
sr320 updated
6 years ago
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I'm wondering if it would be possible to use UMI-tools to perform deduplication just based on read sequence. Let's consider a read with a 5nt-UMI followed by a DNA sequence of biological origin. It sh…
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#### I'm trying to do following to assemble a diatom:
(1) Kneaddata/Trimmomatic for my transcript reads;
(2) Mapping the reads to my unmasked genomes;
(3) Using RNA-Spades for the transcript as…
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Hi, I tried to annotate my genome with funannotate(v1.3.3). When I run the test run for the sample data, for all the genomes, it stopped at filtering out bad gene models
```
[09:32 AM]: now filterin…