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As I mentioned, each student will have a "project" that results in a "product". Do you have any preference to what such project is involved with? What is one idea that comes to mind based on the readi…
sr320 updated
8 years ago
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Hi Team Dada,
Is there a best-practices for running dada2 in parallel? I know that its one of the theoretical selling points but I am not sure of the best way to make use of it. In the tutorial, for …
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Hi Kevin,
I'm trying to run kwip on metgenomic datasets. These are Illumina 2 X 150 paired end reads. I have a total of 90 samples with an average number of 1.5 million read pairs.
Unfortunately I'…
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Hi,
I would like to request your help in creating a phyloseq object for further analysis. This is the first time am getting to use phyloseq and am eager to see some plots and perform some analysis.
My…
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Have you, the snpr core, thought about adding support for importing data from ubiome? I thought about making an "opensnp for ubiome" but realized it's probably better to just add ubiome support to snp…
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Not having a `query.rdata` file I generated my own and ran the pipeline only to get an error if I did not include `names` for my DNAStringSet object (whereas in ShortRead it appears to be replaced by …
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Hi, I am using the github version of MetagenomeSeq
install_github("nosson/metagenomeSeq")
library("metagenomeSeq")
and I am sharing my R file with someone else to use MetagenomeSeq. I am re-running…
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## Remote Contribution Fest happens on 30 Nov and 1 Dec
We are planning a Remote Contribution Fest on **30th of November and 1st of December** for developers to work mainly on Galaxy metagenomic tool…
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In reference to #1583, we are making great progress, thanks everyone! There are still a few things that need to get resolved, if everyone grabs one or two items of the following lists, this will be do…
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`psmelt` returns a weird error when used with a phyloseq object with a single OTU.
``` S
library(phyloseq)
otus
audy updated
10 years ago