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Hi Vladim,
Thanks for developing this software and for its detailed documentation! I have succesfully used DIA-NN to run some quantifications. However, I have the following question:
I wanted t…
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PTN000045438 adds "thiol-dependent ubiquitin-specific protease activity (GO:0004843)" to members of the PTHR10410 family.
This is based on an annotation from SGD to S000001900/P43588 (@srengel)
PT…
sjm41 updated
2 years ago
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Hi,
I'm using some N-temrinal enzymes (lysN, LysArginase, AspN) alone or in combination with other enzymes. Can you add the possibility of using these to the GUI?
Thanks!
D.
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Hello,
**Describe the bug**
I am using the lastest version of Funannotate and I am having problems with funannotate update. I think the problem is related with the function gff2pasa and my annot…
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See this ticket, starting from this comment yesterday: https://github.com/geneontology/go-ontology/issues/21217#issuecomment-1066102512
@balhoff summarizes:
> The owltools taxon subset command i…
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* **InterPro ID / label**
Clp protease, ATP-binding subunit ClpX IPR004487
https://www.ebi.ac.uk/interpro/entry/InterPro/IPR004487/
* **Description of issue**
I think you can add "ATP-dependent …
sjm41 updated
3 years ago
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Hi, I have freshly installed funannotate through conda, then removed augustus by using "conda remove --force-remove augustus". After that I locally installed augustus 3.3 through apt-get and redirecte…
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Running 311 metaproteome files against CaZy database, machine 10.31.1
error message:
'''Dataset peptide_fdr does not exist for group / of .'''
**Version
- OS: Windows
- Version 0.3.26
…
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Hi @kltm
The 'ultimate' goal is to have all Swiss-Prot (reviewed) entries. The file is in the same GOA ftp, it's called
uniprot_reviewed.gpi.gz
The bacteria and viruses file was to test a sma…