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Refactor YAL5-single-codons.R and YAL5-codon-pairs.R to separate concerns within each script [Edward will provide requirements], comment using Roxygen2-style comments, add `testthat.R` compliant tests…
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Please provide as much information as you can:
* **GO term ID and Label**
* **Reason for deprecation** Put an x in the appropriate box:
- [x] The reason for obsoletion is that the term is not…
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## Problem
I've noticed that the `gen(choices=[...])` functionality sometimes performs poorly, even for simple tasks. This is due to a flawed normalised logprobs calculation. The calculation biases o…
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Hello,
I am running Arriba and Starfusion as fusion transcript detection algorithm and I had inquiry about reference genome usage.
I am previously have experiments(ribosome sequencing and non-ca…
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Hi,
I see the following relations in the knowledge graph:
['enables_nucleotide_binding', 'enables_metal_ion_binding', 'enables_transferase_activity', 'enables', 'involved_in_signal_transduction', …
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- [x] increased nuclear envelope SPB fenestra size
- [x] cytoplasmic protein mislocalized to nucleoplasm during mitosis
- [x] ribosome mislocalized to nucleoplasm
- [x] persistent nuclear envelope …
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Annotate the other 3 rixosome complex subunits using ISS
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I have been trying pytom template matching on various tomograms and cannot use the automatic thresholding of the scores. It seems like the problem is no matter how many candidates I extract I don't ge…
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Any duplications with an end position at or past the stop codon should be classified as 3'UTR regardless of start position. Currently mapping `NM_153223.3:c.2959_*1dup` yields `NP_694955.2:p.(Met1?)`.…
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Hi, thanks for developing such an interesting tool! It was great to see your poster during the Ribosome Heterogeneity meeting at the Royal Society!
I would like to give dripARF a go but I'm wonder…