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In order to evaluate the cost-effectiveness to help us to prioritize the work so as to support tumour-only targeted sequencing data submission and process, we will need to analyze the impacts from the…
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### Ask away!
Can you clarify if from the output of the pipeline what is in this sorted.aligned.bam file.
I am looking for an output bam file of the reads that aligned to the amplicon of interes…
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### **EPI_ISL_18766752**
Usher Tree Link: https://nextstrain.org/fetch/raw.githubusercontent.com/ryhisner/jsons2/main/AY.124_Delta_Portugal_2023-12-22_Usher.json?c=gt-M_19&gmax=27191&gmin=26523&la…
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Many of them are dynamic or relate to proximal variants. Are they useful?
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Dear Monopogen developers,
I'd like to express my gratitude for developing Monopogen. It has been invaluable for my research. I've encountered an issue and was hoping to seek your guidance on it.
Wh…
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Hey,
I'm getting "Error in !is.null(homsegs) && !is.na(homsegs)" when I try to run `ascat.aspcf` using ascat v3.1.1 installed via conda. Reproducible example below.
```
library(ASCAT)
Germ…
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## Change term
* Submitter: John Wieczorek (following discussion initiated by Steve Baskauf @baskaufs - see below)
* Justification (why is this change necessary?): Clarity
* Proponents (who needs…
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JG.3+C1314T,C1684T,T1889C(rev),T2334C(rev),C4012T,A27983G,T29625C(rev)
Orf1a: T350I, C542R(rev), V690A(rev)
Orf10: F23S(rev)
EG.6.1--JG.3--EG.6.1
Breakpoint 1 between 2335 and 3240
Breakpoi…
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**Description**
Right now we're including rules in the PON.smk and QC.smk separately from the ones defined in the `snakemake_rules` dict in `rules.py`, and the way the rules are included in the SMK…
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Continuation of the [previous issue](https://github.com/mikf/gallery-dl/issues/146) as a central place for any sort of question or suggestion not deserving their own separate issue.
Links to older …
mikf updated
20 hours ago