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Modifies how `aa_mm_biopython_runmatch_genie_9loc.py` is run to compute DR amino acid mismatches differently
Need to add a new function to `aa_matching_msf_genie.py`
There is an existing functio…
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### I installed the package with the following script:
cd /home/lcb
git clone https://github.com/oushujun/EDTA.git
mamba env create -f EDTA_2.2.x.yml
### The installation is as follows:
Name …
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Full traceback:
` PhageBoost -f /data/san/data0/users/linda/databases/release202/fastani/database/GCA/000/007/325/GCA_000007325.1_genomic.fna.gz -o results
`
```
processing: GCA_000007325
time…
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Hello ! When trying to run the test `mini_config.ini`, i encountered this error (already mentioned but there was no follow-up):
```
/mnt/software/bioinfo/samtools-1.9/samtools: error while loading s…
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### Setup
I am reporting a problem with Biopython version 1.69 and higher, Python versions 2.7 and 3.7, and operating system Redhat Linux 6 and 7
Prior to Biopython 1.69 our PDB residue renumber…
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When running
```
conda create -n phabox2 jyshang2::phabox=2.1 -c bioconda -c conda-forge -y
```
like specified in the wiki, the following output and error is shown:
```
Channels:
- bioconda
…
pmaen updated
7 minutes ago
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## Aim
Write a tutorial (with pictures) that explains how nucleotide distance matrices are generated
## Background
Since it is best to start simple and get more complex, we are starting by…
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Pyright was added in #1246. The [default Pyright configuration options](https://github.com/microsoft/pyright/blob/-/docs/configuration.md) result in many violations from Augur's code as-is. To allow i…
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Hello - just cannot get arpeggio to work, and would much appreciate some help! Thanks Shoumo
Installation as follows:
conda create -n arpeggio-env python=3.7 anaconda
conda activate arpeggio-env
…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
I'm trying to package Biopython 1.77 in Gentoo, and am testing against Python 3.6/3.7…