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**Priority.** Need to look through these missing subclass relationships after implementing the new EFO pipeline:
```SubClassOf( )
SubClassOf( )
SubClassOf( )
SubClassOf( )
SubClassOf( )
SubClassOf( )…
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- Call the SEER API to ingest into the OHDSI vocabulary tables NAACCR data item/data item categorical values.
- Get an account and API key from here: https://api.seer.cancer.gov/new_account
- Re…
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I think that http://www.ebi.ac.uk/efo/EFO_0002713 should be pancreatic adenocarcinoma rather than breast adenocarcinoma.
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- If ingesting, they should be mapped to 0.
- If not ingesting, should we add them to the vocabulary so that they are recognized?
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Do you have in mind including Star allele pipeline and CPIC guidlines?
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LOINC has several codes that could be used to represent ER, PR and HER2 status. For example, for ER:
**Option 1. [85337-4](https://r.details.loinc.org/LOINC/85337-4.html?sections=Comprehensive) | E…
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We have had multiple requests for terms such as "Breast mass" that represent a phenotype prior to workup of the diagnosis. I think this is valid. It should not go under neoplasm though because there a…
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Check NCIT terms and document
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Hi,
Thank you for contributing science with this package.
~~Is there a way that I can tweak randomisation to apply my case which I want to normalise tri-nucleotide context considering TF base co…