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**20240712更新:**
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软件作者看到了这篇教程, 指出其中错误, 并对分析挂载流程提出了相当多的宝贵意见, 具体内容已整合到一篇新的[文章](https://wangzhsi.github.io/post/HapHiC-de-an-zhuang-yu-shi-yong-%28-er-%29.html), 请移步查看.
以下原文:
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[HapHiC…
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Hello,
I have finished running GreenHill and I separated the haplotypes based on hap0 and hap1 then after running juicer pre -s "DpnII" followed by run asm visualizer from the aiden lab, I get int…
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Hi, I am currently manually curating a a tetraploid genome in Pretextview which I assembled with HapHic, I am just wondering how you would infer the haplotypes from the HiC contact map? I understand t…
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I'm still using the official homeassistant integration that is working, but I want to test this proxy without making changes to my juicebox device settings, because I still need the functionality of i…
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The hic file regenerated by the order：
hictk load genome.sizes A1.hic -f validpairs -b 40000 < A1.allValidPairs
However the .hic file can not load into the juicerbox, how to resolved the err.
[A1…
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```
$HOME/matlock/bin/matlock bam2 juicer $HOME/mapping_pipeline/tmp/PEER_373L.bam $HOME/matlock_juicer
INFO: converting bam to juicer on /mnt/lustre/macmaneslab/macmanes/mapping_pipeline/tmp/PEER_3…
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**Welcome to the pyGenomeTracks GitHub repository! Before opening the issue please check
that the following requirements are met :**
- [ ] Search whether this issue (or a similar issue) has bee…
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HelIo, I used hifiasm -o rz.asm -t 30 --n-hap 4 --ul ONT.fastq.gz hifi.fastq.gz to assemble a tetraploid genome, didn't Distinguish haplotypes, would you tell me there will be 2 or 4 p_ctg.gfa in the …
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Hello Xiaofei,
Thank you for developing the Haphic software.
I am currently working on the assembly of a complex polyploid genome and I am trying to scaffold the “p_utg” sequences obtained from …
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Hello!
I try to run HapSolo but I get the same error all the time with different minimap2 outputs.
**Error: HapSolo has two seperate set of contigs! Please submit bug report and sent bugreport.l…