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ShunOuchi
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GreenHill
De novo chromosome-level scaffolding and phasing tool using Hi-C
GNU General Public License v3.0
25
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Using HiFi + Hi-C Hifiasm assembly as input
#37
foreignsand
opened
2 weeks ago
1
About naming of haplotypes.
#36
Isoris
opened
1 month ago
1
GapClose Error with HiC data in Platanus-allele-2.2.2_modified
#35
zilov
closed
1 month ago
6
Preprocessing of Hi-C reads
#34
S-111
closed
2 months ago
2
Fix platanus allee
#33
he-lucky
closed
3 months ago
0
How to edit the assembly in the juicebox app?
#32
Isoris
closed
4 days ago
6
[help for next steps] more contigs than chromosomes after greenhill
#31
Isoris
closed
1 month ago
12
role of inward-pointing reads
#30
COMInterop
closed
1 month ago
9
Input files when using hifiasm
#29
S-111
closed
4 months ago
1
[about downsteam hic analysis] Which version of juicertools and juicer should we use ?
#28
Isoris
closed
4 months ago
0
the number of read is odd in file
#27
huangl07
closed
1 month ago
2
Generating AGP file
#26
kiratalreja3
closed
1 month ago
2
puzzled by the hic_map generated from the test_data and the pipeline
#25
88Zoe
closed
8 months ago
2
[Technical question]
#24
Isoris
closed
5 months ago
2
[General question] Which assembler to use prior to GreenHill ?
#23
Isoris
closed
8 months ago
8
Add resume function?
#22
annabel-NZ
closed
8 months ago
5
Error when running with paired ended reads
#21
kiratalreja3
closed
6 months ago
2
Segmentation fault (core dumped)
#20
peiwen18
closed
5 months ago
6
minimap2 self mapping step use so much memory, it is unbelievable!
#19
xiekunwhy
closed
7 months ago
2
greenhill continues after minimap2 got killed
#18
chregu1971
closed
7 months ago
2
Hifiasm for scaffolding
#17
LHG-GG
closed
7 months ago
4
Greenhill takes too long to run
#16
jinxin112233
closed
7 months ago
6
Hifiasm's output for greenhill
#15
qukunjing
closed
9 months ago
2
Error(3): Error, File fomat exception!! Read file is unknown format.
#14
ishengtsai
closed
9 months ago
8
How to use both hifi and ONT reads together?
#13
JhinAir
closed
11 months ago
2
conda install failure
#12
cabbagesofdoom
closed
9 months ago
2
Compile failure
#11
cabbagesofdoom
closed
9 months ago
2
Utils
#10
rkajitani
closed
1 year ago
0
Utils
#9
rkajitani
closed
1 year ago
0
Mince dev
#8
ShunOuchi
closed
1 year ago
0
add badge in README.md, workdflows
#7
th2ch-g
closed
1 year ago
1
Modification to input paired haplotypes (-c -b)
#6
rkajitani
closed
1 year ago
0
Selft selfAligning also need minimap2
#5
xiekunwhy
closed
2 years ago
1
compile error
#4
xiekunwhy
closed
11 months ago
13
remove debug message in stderr, modify usage message, and add .gitignore
#3
rkajitani
closed
2 years ago
1
fix FALCON-Unzip test script and README.
#2
rkajitani
closed
2 years ago
0
add test scripts.
#1
rkajitani
closed
2 years ago
0