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NMDC use case:
In addition to the MIxS environmental triad of EnvO terms, NMDC also describes the origin of biosamples with 5-part GOLD paths.
Interactive GOLD paths explorer: https://gold.jgi.d…
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consider mid | multiplex identifiers
The [IUPAC nucleotide codes](https://www.bioinformatics.org/sms/iupac.html) are listed below.
I was thinking of allowing all of those, upper or lower case, e…
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As part of https://github.com/INCATools/biosample-analysis we are normalizing units for mixs properties like salinity
We are seeing 100s of samples with values like `26.49 PSU`
https://en.wikipe…
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**Current term details**
Please supply the current details of the term that you would like to update:
```
Term name - microbial biomass
Term ID - microbial_biomass
Structured comment name -
Def…
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https://www.ncbi.nlm.nih.gov/books/NBK21100/ says
> Taxids are indexed with the prefix txid: txid9606 [orgn].
Source organism modifiers are indexed in the [properties] field, and such queries wo…
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Do we have terms to handle when multiple fields map to a single field.
For example, it is common to see dates broken out into year, month, day field; e.g.: collection_year, collection_month, colle…
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`Occurrence` says '1' for all of them, but there are multi-valued examples
- env_broad_scale
- env_local_scale
- env_medium
> Annotating a pooled sample taken from various vegetation layers in…
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It seems like this term is trying to say that acceptable values may take two or more different forms, based on some condition. Maybe it is even referring to another term that should be used under othe…
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Based on https://github.com/iobis/Project-team-Genetic-Data/issues/8.
We currently do not have any recommendations as to how to treat controls in the publication process. It should be possible to r…
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The goal of this ticket is two-fold:
1. Stand up a Fuseki server on SPIN to host an instance of a graph db that the graph search API can query against. Details in #401
2. Give @PeopleMakeCulture…