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Hello @zachary-foster
I attended your Phytobiome Conference in Montpellier last year. I manage now to analyze my data with Metacoder package. I am working on the rice microbiome, I'm looking the mi…
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Hi Simone, I post on your git rather than on my thread
I tried to launch the analysis from my three fq.gz files as you suggested after I renamed them BC01.fq.gz BC02.fq.gz, and BC03.fq.gz but it fa…
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Following on from the [conference call](https://github.com/tdwg/tnc/issues/29), and @deepreef’s comment that
perhaps we still don’t have a precise definition for `tnu:TaxonomicName`,
and that the is…
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In the [discussion around the Darwin Core RDF Guide that @baskaufs summarised](https://github.com/tdwg/rdf/blob/master/TCSthread.md), @deepreef stated that a Taxonomic Name is a special form of a Taxo…
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A thread for exploring the idea.
Related issues/comments include
#1136
#1809
#1817
https://github.com/ArctosDB/arctos/issues/735#issuecomment-446007407
https://github.com/ArctosDB/arctos/is…
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I stumbled upon this: http://arctos.database.museum/name/Pelecanus%20erythrothynchus which is, as far as I can tell, simply a misspelling of Pelecanus erythrorhynchos (American White Pelican). This cl…
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The current heatmap script can only work if there are e.g. viruses in the final taxonomic classifications. If there are none, the Python script cannot draw the heatmaps and Snakemake will see that not…
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I would really appreciate some help at interpreting the PYANI output.
METHODS:
I am aligning some genomes I sequenced from pure isolates to metagenomic assembled genomes from other studies. I ass…
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Hello,
I built my KRAKEN2 database as shown below
```
#!/usr/bin/env bash
#SBATCH -A SNIC2018-3-18
#SBATCH -N 1
#SBATCH --ntasks 1
#SBATCH --cpus-per-task 20
#SBATCH -C MEM64|MEM128
#SBAT…
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Want a webinar to cover how Arctos handles taxonomic data.
Andy Doll volunteered to present along with, perhaps, Derek Sikes.
Tentatively scheduled for March 2018.