MaestSi MetONTIIME issues

MaestSi / MetONTIIME

A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

GNU General Public License v3.0

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issues

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Problem with finding the path 'workDir'

#110 sebastianavalon closed 1 month ago
7
metONTIIME Running Slow - Cannot Increase RAM

#109 danuccio opened 1 month ago
8
Looking for a pre-taxonomic assignment OTU table

#108 irc47 closed 1 month ago
2
Assign Taxonomy Error Unclear

#107 irc47 closed 3 months ago
2
Does MetONTIIME perform demultiplex?

#106 tjlim10 closed 3 months ago
1
CollapseTables only makes level 1 with greengenes DB

#105 irc47 closed 4 months ago
2
Error executing process > 'concatenateFastq'

#104 isa-wilson closed 4 months ago
7
The following IDs are not present in the metadata

#103 ShareiFae closed 4 months ago
33
Error executing process > 'assignTaxonomy

#102 anilchauhanhp9 closed 5 months ago
3
missing fromPath parameter error when trying test data set

#101 irc47 closed 6 months ago
5
Error executing derepSeq involving Vsearch

#100 danuccio closed 5 months ago
6
Missing `fromPath` parameter -- Check script 'metontiime2.nf'

#99 stephaniekoo closed 5 months ago
12
import fasta files

#98 anilchauhanhp9 closed 6 months ago
4
--maxNumReads set to more than 50000

#97 leakrema closed 7 months ago
2
Error executing 'derepSeq' process during analysis with provided example data

#96 linxavier1 closed 7 months ago
6
Cannot re-open Issue at https://github.com/MaestSi/MetONTIIME/issues/93#issuecomment-1985402041

#95 richelbilderbeek closed 8 months ago
2
Suggest: either gzip, or use .fastq extension

#94 richelbilderbeek closed 8 months ago
1
Minimal-but-complete set of example files, say, below 1 MB, to work with the supplied config file?

#93 richelbilderbeek closed 8 months ago
10
How to lower process requirement for memory?

#92 richelbilderbeek closed 8 months ago
1
Run MetONTIIME on GitHub Actions with Docker: Process requirement exceeds available CPUs -- req: 6; avail: 4

#91 richelbilderbeek closed 8 months ago
1
Run MetONTIIME on GitHub Actions with Singularity: qsub not found

#90 richelbilderbeek closed 8 months ago
2
Can run MetONTIIME on a local computer? If yes: call sbatch on non-HPC hardware?

#89 richelbilderbeek closed 8 months ago
1
Question: filtering features for nanopore sequencing data

#88 tjlim10 closed 9 months ago
2
Error executing process > 'concatenateFastq'

#87 ianm0001 closed 9 months ago
13
deprepSeq not created

#86 ObRICa closed 9 months ago
1
Combining output files

#85 annegilewski closed 9 months ago
2
Error executing process > 'downsampleFastq'

#84 erazzolini closed 10 months ago
16
AssignTaxonomy error exit status 137

#83 tjlim10 closed 10 months ago
10
Error 137 on Docker

#82 annegilewski closed 10 months ago
3
Switching to GreenGenes db

#81 annegilewski closed 10 months ago
6
Failure to Launch...

#80 annegilewski closed 11 months ago
24
Large amount unclassified with Blast

#79 BirgitRijvers closed 11 months ago
4
Taxonomy_tsv file

#78 leakrema closed 11 months ago
3
Large dataset advice

#77 BirgitRijvers closed 1 year ago
13
Process error

#76 ObRICa closed 1 year ago
11
Taxonomic assignment - 50%+ unassigned reads

#75 mzakram219 closed 1 year ago
3
Assistance with MetONTIIME

#74 annegilewski closed 1 year ago
15
Adjust CPU and RAM

#73 timyerg closed 1 year ago
2
COLLAPSE_TABLE PROCESS CREATES ONLY RESULTS FOR TAXONOMIC LEVEL1

#72 dloukovi closed 1 year ago
5
process killed in 'assign taxonomy'

#71 dloukovi closed 1 year ago
4
Problem while pulling the singularity image on a cluster

#70 Enorya closed 1 year ago
5
Invalid value for '--o-bray-curtis-distance-matrix':

#69 baotg080599 closed 1 year ago
2
Question for running a large dataset

#68 ShaelynXU closed 1 year ago
5
ERROR ~ Error executing process > 'importDb (1)'

#67 ShaelynXU closed 1 year ago
12
folder 4e does not exist

#66 joyleng closed 1 year ago
3
No such variable: sequences_db

#65 joyleng closed 1 year ago
18
ERROR: process > diversityAnalyses

#64 nbel15 closed 1 year ago
15
ERROR ~ Error executing process > 'concatenateFastq'

#63 baotg080599 closed 1 year ago
11
ERROR ~ Error executing process > 'concatenateFastq'

#62 hvanderheyden closed 1 year ago
9
Analysis Keep on Crashing. Metadata file path not found.

#61 Jawen-D closed 1 year ago
12