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#### Description of the problem
K dimensional trees is a quite important data structure for storing high dimensional data. This issue aims at adding the same.
The task is planned to be completed …
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It would be great if we could have a doc on our wiki that extends https://github.com/bioinfo-ucsd/wiki/issues/5 and provides some tips on how to set up a package/tool in our lab so that others can mai…
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As per subject. As a final step the pipeline should store this data automatically or else some other comprehensive solution should be found.
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- [x] confirm with dev team about the current usage of two "info/origin" fields
- [x] add new fields under "files/info" to store related EGA ids. The section can be nested fields
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## Merging reads per hostplant
As a comparative measure against population based approach, we will assemble metagenomes using all CH and CO samples separately.
```
# New directory for hostplant …
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Hi,
I have an issue when trying to run HISAT-genotype.
When I try to run the following command:
hisatgenotype --base hla --keep-alignment --assembly -z indicies --bamfile RR-Plate2-A1_FCHCMJ5BBXX…
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- Last modified: Fri Feb 01, 2019 10:46AM
- Sign: JN
## Description:
Running mb.3.2.7 + beagle3 (GPU) crashes on Ubuntu 18.04. Trying to reproduce, and debug at the moment. More to come. Mea…
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Hello!
Optimization calculation by semi-automatic calibration approach was performed using data in github directory, but it did not converge as shown in the following picture. Changing the ratio fa…
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## nf-core
nf-core produces pipelines with gold standard tools for various analyses.
- Workflow manager using `nextflow` language.
- Compatible with SLURM
- Uses Docker, Singularity and conda t…
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Hello,
I am trying to run PlasGUN on my dataset and I run into some problems:
I followed the manual to properly install the program. Do you have any idea of how to solve it? Thanks
```
(plasgun)…