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Hello: I try to assmebly the hifi reads with the Ul-ont reads( filtered the reads length less than 50kb) 。 The previous steps were run well , but its crashed after the *bin file gnerated. …
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Hi, I tried to polish a virus genome(hiv) with a single end long read file and a genome, the NextPolish folder only have one single file called 00.score_chain and It shows like that:
(base) zhi@zhi-T…
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Hi,
I've downloaded the code at commit f6755dd, compiled, and I'm getting a segmentation fault. I'm running metaMDBG on some PacBio long reads, with a command line like this:
`metaMDBG asm --out-d…
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Hi,
I am running v0.4.3 as a Singularity container. `secphase_index` can process the BAM file (1 cell of hifi reads), but when I start `secphase` like this:
```
./secphase_v0.4.3.sif secphase -i …
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This will help ease the transition when we do deprecate and remove the "HIFI" variables.
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http://hifi-rem.ipower.com/forums/search.php?search_author=underquark&sid=67ad62d99e9214e8e4e57136908ae1ff
some info here
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We are training fastspeech2 on a single speaker. The output .wav files so far seem robotic. We are thinking that the hifi-gan vocoder, if trained on the same speaker, can give us better results. How c…
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Hi,
There is huge difference with the haplotype 1 and 2 output with version.
Hifiasm version _0.15.4-r347** :
hifiasm -o xx.asm --primary--n-perturb 20000 --f-perturb 0.15 --seed 11 -l3 --n-wei…
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Hi,
I run hifiasm with ~20G hifi reads with paired Hi-C read (50G for read1, 49G for read2), the genome size is around 3G.
I had test hifiasm with the test data you provide, it worked well.
While w…
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How to solve it:
Select jobs to execute...
[Wed Aug 14 14:31:51 2024]
rule indexGraph:
input: 2-processGraph/unitig-unrolled-hifi-resolved.gfa
output: 3-align/graph.index, 3-align/dip…