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Nextomics
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NextPolish
Fast and accurately polish the genome generated by long reads.
GNU General Public License v3.0
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How does NextPolish handle short-reads mapping to multiple parts of the genome?
#133
RenscoHogers
opened
3 days ago
1
An error message was encountered while running 00.lgs_polish/04.polish.ref.sh.work/polish_genome01
#132
jiuyaojiaonini
opened
2 months ago
0
During the execution of samtools index, I encountered an error: "invalid option -- '@'"
#131
jiuyaojiaonini
closed
2 months ago
4
The process of polishing causes a significant decrease in genome size.
#130
xujialupaoli
opened
2 months ago
8
problem with NextPolish-CentOS6.9.tgz
#129
zhengyanstu
opened
3 months ago
0
polish_genome failed
#128
liuyca1
opened
3 months ago
1
zlib.h not found error
#127
BRNiu
closed
4 months ago
1
[main_samview] fail to read the header from "-"
#126
kishor2019
opened
6 months ago
1
SLURM out of memory and time...
#125
VendelboNM
closed
7 months ago
1
run fails with long read only in conda env
#124
splaisan
opened
8 months ago
5
modifiy the associative array
#123
jyw-atgithub
opened
8 months ago
0
slurmstepd: error: JOB CANCELLED DUE TO TIME LIMIT
#122
VendelboNM
closed
7 months ago
1
make[2]: *** [Makefile:30: bwa] Error 1 错误
#121
smoothyly
opened
8 months ago
1
How does NextPolish polish an assembly with long reads?
#120
shelkmike
closed
9 months ago
1
db_split failed:
#119
YDD99
opened
10 months ago
4
Installation failure with multiple definition of 'rle_auxtab'
#118
tatsu1207
closed
11 months ago
2
Test run failed at map_genome: "[gzclose] buffer error"
#117
jmpolinski
opened
11 months ago
3
Ignore the secondary alignment
#116
lilinzhou
opened
11 months ago
2
run nextplolish2.py sleep
#115
wang-zewen
closed
11 months ago
8
[question] combine with medaka or not?
#114
JWDebler
closed
1 year ago
3
User defined alignment pipeline for short- and long-reads
#113
RenscoHogers
closed
1 year ago
2
Empty bin directory after installation?
#112
JolandadeB
opened
1 year ago
2
repeat regions
#111
cfz1998
opened
1 year ago
5
error of generate_lqseqs_from_cluster
#110
fangdm
closed
1 year ago
3
Adding Hisat2 instead of BWA
#109
arslan9732
closed
1 year ago
1
nextpolish2.py never stop
#108
yangfangyuan0102
opened
1 year ago
6
MissAssembly Correction using NextPolish (Need Suggestions)
#107
DrNavi
closed
1 year ago
1
Need information related to example given in NextPolish Software under the folder test_data
#106
DrNavi
closed
1 year ago
4
How to use Nextpolish on NextDenovo draft assembly
#105
DrNavi
closed
1 year ago
2
Using Illumina Hi-C and Chicago data?
#104
000generic
opened
1 year ago
4
NextPolish slurmstepd: error: JOB CANCELLED DUE TO TIME LIMIT
#103
martinmau1
closed
1 year ago
6
Polish with raw or corrected ONT reads?
#102
tbrown91
opened
1 year ago
1
how to deal with "N"
#101
LINGLIU18
opened
1 year ago
1
Reduction in genome size after polishing
#100
Shenu-Hudson
closed
1 year ago
3
Why there is no stats about changes when polished with nextpolish1.py or nextpolish2.py
#99
MongXR
opened
1 year ago
1
gap filling effects?
#98
EugeneKim76
closed
1 year ago
2
ImportError
#97
mergi-2674
closed
1 year ago
4
NextPolish license and distribution of source code
#96
seb45tian
closed
2 years ago
1
Polish only INDELs or only SNPs, and polishing thresholds
#95
mmontonerin
opened
2 years ago
1
How NextPolish v1.4 treat gap in genome ?
#94
Johnsonzcode
closed
2 years ago
1
db_split errors
#93
k-williamson
closed
2 years ago
1
slurm_submit_batch_job error
#92
scylaz
opened
2 years ago
1
No seq_split in new download
#91
Amarea1
closed
2 years ago
5
How long and how much memory should NextPolish require?
#90
kcl58759
opened
2 years ago
4
db split1 issue
#89
kcl58759
opened
2 years ago
6
Unable to run nextpolish program
#88
amit4mchiba
opened
2 years ago
3
Errors with nextPolish.sh.e
#87
Gerlex89
opened
2 years ago
8
Can I use the RNAseq data for genome polishing?
#86
CGsTree
closed
2 years ago
2
Some question about pacbio hifi data polish
#85
xiaobaiymq
closed
2 years ago
6
unable to create files for use for nextpolish.py from a offline method
#84
amit4mchiba
closed
2 years ago
4
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