-
I'd also remind the students on the front page exactly what they did - How many body samples over how long of a period of time
-
1). Split each OTU into sample and control tables to determine which negative control otus to substract
a). echo "split_otu_table.py -i /home/gifl2111/scratch/SMP/split_otu_table_by_body_site/Fore…
-
Jonathan suggested using the best-understood microbial ecosystem for the paper. We could analyze enterotypes, and at the very least should analyze the HMP mock communities. HMP mock community data is …
-
Based on KR distances among samples, one can calculate an edge principle components analysis which, among other things, can highlight which groups of organisms contribute the greatest difference betwe…
-
guppy can calculate the Kantorovich Rubenstein distance among a pair of pplacer placement files. These distances are useful for assessing how similar two microbial communities are to each other. amph…
-
From their abstract:
To determine the reproducibility and quantitation of the amplicon sequencing-based detection approach for analyzing microbial community structure, a total of 24 microbial communit…