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From Andrew Collins:
One feature that I would suggest changing is the inclusion of Orphon genes (e.g. IGHV1/OR15-1*01). This is something I discussed with Gur today at length. VDJbase reports a sur…
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The orgDb reduces genes to almost half ~25K; whereas EnsDb (albeit older release) retains 50K. Add an explanation and look into the differences
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Hi,
When I run LIRICAL I get a "Could not identify gene" error, repeated for every variant. See snippet below:
```
AX747861[ERROR] Vcf2GenotypeMap - Vcf2GenotypeMap.javaorg.monarchinitiative.l…
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Hi I run RADIA in my samples and I got this alleles in the calling:
A
B
C
G
K
M
R
S
T
W
Y
Is it normal? How can I deal with them? During the postporecessing of the vcf I am getting a l…
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Hi all,
I have a general question with regards to the algorithm of zUMIs in mapping reads (might be a STAR issue, hope you can give me a direction)
I am getting the most abundant genes in my sam…
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Having trouble making sense of this...
Steps to reproduce:
1. load E-MTAB-7365
2. DE on K=5
3. Check heatmap (screenshot)
4. Note Cluster 3 has STRONG positive set, e.g., 27.598. Also note DE …
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Back in 2015 these terms were requested(#299 ):
Transposable_element_pseudogene (SO:0001897)
and
transposable_element_CDS (SO:0001896)
Do you think it would be appropriate to have:
transpo…
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Hi,
could you please create a new term Go corresponding to long noncoding RNA binding as a child of RNA binding.
In fact in PMID:25578728, RBM7 binds many sort of RNA namely long non coding RNA see …
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Genomic islands are being called for pseudogenes but the visualization does not display them.
Should GIs not be called for pseudogenes or should the pseudogenes be added to the visualization?
If the…
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eg. https://www.pombase.org/gene/SPBPB21E7.08