-
I believe some changes in Xcode between High Sierra and Mojave is causing some compilation issues.
-
Since we've deprecated type names (e.g. `FASTA`) of file formats in Bio.jl 0.4, we can use these for names of submodules. For example, `Bio.Seq.FASTAReader` can be `Bio.Seq.FASTA.Reader`, which looks …
-
-
I am running on Mac OS X Mojave. Here's the error I get:
Collecting pyBigWig
Using cached https://files.pythonhosted.org/packages/d5/0d/8e2a1edb9524790c6a4d0b70bc800a8e4afee1bc7bdd048c54b8d9cf1c…
-
Using the following bigbed file: https://www.encodeproject.org/files/ENCFF662CHC/
```
In [1]: import bbi
In [2]: list(bbi.fetch_intervals('./ENCFF662CHC.bigBed', 'chr1', 0, 100))
*** Error in …
-
Hi Jin,
The format of peak files produced by this pipeline seems are bigwig or BB, can I use these files directly for annotation of genomic feature? What I am using for annotation is Chipseeker, i…
-
The task is to parse the ENCODE encyclopedia of DNA elements and create GenomeNodes for them:
Download all data here: [Data Matrix](https://www.encodeproject.org/matrix/?type=Annotation&encyclopedi…
-
currently the webserver has no functionality to visualize motif hits on sequences. This would be a very nice feature that we can queue for some time after the submission.
-
I have been unable to open bigBed files, both local and remote. Opening bigWig files works just fine. Using the example bigBed opening in the documentation, I get the following error:
```
$ python…
adelq updated
6 years ago
-
Hi,
I am not sure what's the exact format of the Chrom.txt file. Can you tell me what's the meaning of this parameter and provide an example?
Best regards.
Kai