deeptools pyBigWig issues

deeptools / pyBigWig

A python extension for quick access to bigWig and bigBed files

MIT License

218 stars 49 forks source link

issues

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Chromosome order potential issue

#152 potulabe opened 1 week ago
2
pyBigWig.c: fix build failure with gcc 14.

#151 emollier opened 4 months ago
0
get np2 compatible

#150 WardDeb closed 5 months ago
0
pyBigWig.entries() should return empty array, not None when no entries are found

#149 balwierz opened 7 months ago
0
Out of memory listing entries on one human chromosome on a machine with 300 GB ram and 165 GB BigBed file

#148 balwierz opened 7 months ago
1
'zsh: segmentation fault '

#147 violacimatti closed 5 months ago
1
Stats Sum Not Working as Expected

#146 atancoder closed 9 months ago
0
Simple patch to resolve conflict with roundup() macro

#145 outpaddling opened 11 months ago
0
Issue Downloading pyBigWig

#144 tdb7dgr closed 12 months ago
1
Support for python >=3.11

#143 CodingKaiser opened 1 year ago
1
addHeader does not support multiple calls

#142 rlowe-altoslabs opened 1 year ago
1
Installing through pip not working

#141 callum-b closed 1 year ago
9
Add wheel to pypi upload in github actions

#140 EricR86 closed 1 year ago
3
Add MANIFEST.in

#139 dpryan79 closed 1 year ago
1
pip installation broken

#138 ABignaud closed 1 year ago
4
Bump to 0.3.19

#137 dpryan79 closed 1 year ago
0
fix tests

#136 dpryan79 closed 1 year ago
0
Updated build and wheel distribution for pyBigWig

#135 EricR86 closed 1 year ago
4
Implement #133

#134 dpryan79 closed 1 year ago
2
Can't enforce numpy features when pyBigWig is used as a dependency in downstream package

#133 EricR86 closed 1 year ago
5
Writing a nan value should leave a gap

#132 rcasero opened 2 years ago
7
pyBigWig fails to find numpy installation when installing from PyPI

#131 EricR86 closed 2 years ago
5
library import error

#130 chanwkimlab closed 2 years ago
4
Create a BedGraph file using addEntries() throws segmentation fault

#129 priesgo closed 2 years ago
2
numpy support broken in 0.3.18?

#128 francois-a closed 2 years ago
1
support for osx-arm64

#127 phylyc closed 2 years ago
2
Cannot add entries of value type int, but only float

#126 XikunZhang opened 2 years ago
2
Document performance considerations?

#125 alexlenail opened 2 years ago
4
RuntimeError: Invalid interval bounds

#124 Ankita-1211 closed 2 years ago
0
Suppress logging/error messages

#123 EricR86 opened 2 years ago
2
BigBed interval problem

#122 jtd032 opened 2 years ago
7
Update README.md

#121 BaselAbujamous closed 3 years ago
1
Error Installing pyBigWig

#120 pzhang312 closed 2 years ago
11
1-based BigWig file as input

#119 dshan25 closed 3 years ago
2
Open bw file for appending?

#118 tncowart closed 3 years ago
2
[bwGetOverlappingIntervalsCore] Got an error

#117 wuzhaoqi1015 closed 2 years ago
3
Remove unused "dev" stats option.

#116 nathancfox closed 3 years ago
2
Update the pyBigWig.bigWigFile.stats docstring.

#115 nathancfox closed 3 years ago
0
Issue installing on macOS: pyBigWig.c:6:10: fatal error: 'values.h' file not found

#114 kevlarr closed 3 years ago
2
Write bigwig to BytesIO object

#113 joachimwolff closed 3 years ago
4
Fix issue #111, handle empty files AND those with empty summaries.

#112 dpryan79 closed 3 years ago
0
File with incorrect header information read as empty

#111 dkoes closed 3 years ago
4
error raised when start and end positions are identical.

#110 fardokhtsadat closed 3 years ago
1
Problem installing pyBigWig

#109 beetlejuice007 closed 4 years ago
3
Add poweron architecture ppc64le to travis build

#108 asellappen closed 4 years ago
0
Support for GCP bucket access?

#107 francois-a closed 4 years ago
2
Failure to install pyBigWig package in python3.8-buster container when numpy is installed

#106 blaiseli closed 4 years ago
1
Mismatch in the magic number when trying to open bigwig file to fix chromosome names

#105 WimSpee closed 4 years ago
2
What is "None" bigwig signal values mean from pyBigWig bw.stats?

#104 kac2053 closed 4 years ago
1
Python 3.8 support

#103 joachimwolff closed 4 years ago
2