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deeptools
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pyBigWig
A python extension for quick access to bigWig and bigBed files
MIT License
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Change chromosome names.
#101
amv33576
closed
4 years ago
1
"Empty" values in "manually" constructed bigwig file.
#100
blaiseli
closed
3 years ago
3
How to install pyBigWig in windows?
#98
burcakotlu
closed
3 years ago
2
pyBwGetChroms does not work any more with a BigWig that has headers
#97
blaiseli
closed
4 years ago
4
get the list of all possible stats
#96
lldelisle
opened
4 years ago
2
pybigwig.values produced negative values
#95
BenxiaHu
closed
3 years ago
1
Add numpy support for bw.stats()
#94
nvictus
closed
4 years ago
2
Can there be overlapping intervals in bigWig files?
#93
burcakotlu
closed
5 years ago
7
PyUnicode_AsASCIIString returns a new object that needs to be DECREF'd
#92
dpryan79
closed
5 years ago
1
Is memory released on bw.close() ?
#91
PanosFirmpas
closed
5 years ago
6
Writing a bigwig file in python3 is extremely slow compared to python2
#90
Young-Sook
closed
3 years ago
1
IGV fails to read bigWigs generated by pyBigWig
#89
pbenner
closed
5 years ago
4
Segfault when trying to access a non-existing header
#88
pbenner
closed
5 years ago
1
bump to 0.3.16
#87
dpryan79
closed
5 years ago
0
Fix #85
#86
dpryan79
closed
5 years ago
0
Reading bigWig files sometimes fails: Uninitialized bwRTree_t->root variable
#85
pbenner
closed
5 years ago
2
Declare versioned dependency on libBigWig instead of copying
#84
smoe
closed
5 years ago
2
Copy over changes from libBigWig
#83
dpryan79
closed
5 years ago
0
Create wheels?
#82
endrebak
closed
5 years ago
2
Does not compile without curl
#81
jbedo
closed
5 years ago
11
pyBigWig does not install through install_requires for python package
#80
msbentsen
closed
3 years ago
9
Hi, I tried all the way to install pybigwig, but all failed
#79
Urheen
closed
5 years ago
1
ImportError: ndefined symbol: PyInt_Check
#78
nlapalu
closed
5 years ago
4
Bump to 0.3.13, drop support for python2.
#77
dpryan79
closed
5 years ago
0
Fix the build with Python 3 and an external curl
#76
rmsds
closed
5 years ago
1
Error: Mismatch in the magic number
#75
alexpreynolds
closed
5 years ago
2
Parallelizing pyBigWig.values()
#74
nicolazilio
closed
5 years ago
5
libcurl3/4 issue on Ubuntu machine
#73
oristaszewski
closed
5 years ago
1
Fix #71
#72
dpryan79
closed
5 years ago
0
Incorrect check of malloc result
#71
victzh
closed
5 years ago
1
pip install pyBigWig does not work on latest version of Anaconda (5.3, Python 3.7 version)
#70
daquang
closed
5 years ago
4
pyBigWig using 30+ cores
#69
goodez
closed
5 years ago
5
Throw an error on long chromosomes
#68
dpryan79
closed
5 years ago
1
Try to properly fix #29
#67
dpryan79
closed
6 years ago
0
Fix #63
#66
dpryan79
closed
6 years ago
0
y chromosome in Female error
#65
judithhariprakash
closed
6 years ago
0
pyBigWig can't open Path objects
#64
gpratt
closed
6 years ago
1
RuntimeError: You must supply at least a chromosome!
#63
iamjli
closed
6 years ago
6
Write out bw track color?
#62
ShanSabri
closed
6 years ago
1
Test OSX fix with continuum conda and release a bugfix version
#61
dpryan79
closed
6 years ago
1
Do not link to libpython on Mac
#60
gokceneraslan
closed
6 years ago
2
Unable to open bigBed files
#59
adelq
closed
6 years ago
3
Segmentation fault: 11 on MacOS High Sierra 10.13.3
#58
daquang
closed
6 years ago
9
Sum stats type
#57
dpryan79
closed
6 years ago
0
addEntries
#56
andyjslee
closed
6 years ago
4
Fix BigWig creation with numpy
#55
dpryan79
closed
6 years ago
0
can't create a bigwig file
#54
rfarouni
closed
6 years ago
7
fix leak of objects extracted from numpy string arrays
#53
pmarks
closed
6 years ago
3
type="sum" for bw.stats()
#52
tturowski
closed
6 years ago
3
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-eh2hv2_s/pyBigWig/
#51
sandunr
closed
6 years ago
2
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