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daler
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pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
http://daler.github.io/pybedtools
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total_coverage giving a incorrect value
#409
duartemolha
opened
3 weeks ago
0
pybedtools.bedtool.Bedtool.sort()
#408
Accompany0313
opened
2 months ago
0
Add support for csi index
#407
liyao001
opened
2 months ago
2
Testing a fix for an issue with pathlib
#406
dbolser
closed
2 months ago
4
Inconsistent behaviour when using files from `pathlib.PosixPath` with BedTool functions...
#405
dbolser
closed
2 months ago
0
V0.10.0rc
#404
daler
closed
2 months ago
0
Issue while doing pip install pybedtools
#403
sungwookm
closed
3 months ago
3
how to mask gap regions for randomization?
#402
yangsui0122
closed
3 months ago
1
Has pybedtools considered packaging bedtools?
#401
pettyalex
closed
2 months ago
3
Len modifying the Bedtools after a filter
#400
andreforesight
closed
3 months ago
2
fix(bedFile): remove register for ISO C++17
#399
cameronraysmith
closed
3 months ago
1
Unable to install pybedtools==0.9.1 in Python3.10
#398
romunov
closed
2 months ago
4
intersect with multiple -b arguments not working with -sorted
#397
eboileau
closed
7 months ago
1
"fastaFromBed" error
#396
franjmt
closed
3 months ago
2
pybedtools multi_bam_coverage assistance
#395
erinyoung
closed
9 months ago
2
fix: remove six dependency
#394
valentynbez
closed
3 months ago
3
Cythonizing files requires `language_level=2` to be set in cythonize()
#393
lbeltrame
closed
10 months ago
4
bedtools intersect reported incorrect interval intersection
#392
leon945945
closed
3 months ago
3
remove historical py27 support
#391
daler
closed
2 months ago
1
Cannot create a BedTool object from list of regions that uses np.int64 coordinates
#390
aksarkar
closed
10 months ago
0
pybedtools intersect error
#389
katelynmullen
closed
1 year ago
2
Add support for polars dataframes
#388
DevangThakkar
opened
1 year ago
1
build failure under python 3.11
#387
kbipinkumar
closed
1 year ago
6
Add minimal pyproject.toml
#386
afg1
closed
1 year ago
1
to_dataframe() creates 0th row with generic names in nucleotide_content
#385
mheskett
closed
1 year ago
2
"python setup.py bdist_wheel did not run successfully" when pip installing with python v3.11
#384
benrhodes26
closed
10 months ago
8
Support Python 3.10 and 3.11
#383
woutervh
closed
1 year ago
1
Fixes #381 closes all .tmp files opened by .save_seqs
#382
PeterRobots
closed
1 year ago
0
pybedtools.bedtool.BedTool.save_seqs leaves open .tmp files
#381
PeterRobots
closed
10 months ago
0
Add genome arguments to BedTool.sort()
#380
mgperry
closed
1 year ago
1
Could NOT find Arrow (missing: ARROW_INCLUDE_DIR ARROW_LIB_DIR
#379
StephanDrukewitz
closed
1 year ago
2
IndexError with groupby
#378
wbvguo
closed
1 year ago
1
'generator raised StopIteration' error when running 'randomstats' with multiple processes
#377
tparket
opened
1 year ago
4
Missing arm64 MacOS wheel packages
#375
Kentalot
closed
1 year ago
4
Updating setup.py for GPL->MIT relicense
#374
hyandell
closed
1 year ago
1
setup.py needs updating for License change
#373
hyandell
closed
1 year ago
0
Cannot pass argument to pybedtools.sort()
#372
mpj5142
closed
1 year ago
1
pybedtools from conda use version 2.26 not 2.3
#371
udiland
closed
1 year ago
3
Bed identified as SAM
#370
dprat
closed
1 year ago
1
pipenv install trouble
#369
cmatKhan
closed
1 year ago
3
target branch for v0.9.1
#368
daler
closed
10 months ago
0
allow plotting of lengths of intervals
#367
yunfeiguo
closed
2 years ago
2
allow customization of dpi
#366
yunfeiguo
closed
2 years ago
0
`IndexError: list index out of range` with narrowPeak file
#365
csestili
closed
2 years ago
1
Customized header
#364
mike-molnar
closed
2 years ago
2
Handling of wide pseudo-bed files (pseudo-bed files interpreted as .sam)?
#363
semenko
closed
2 years ago
2
numpy.int64 has no attribute isdigit
#362
urrik98
closed
2 years ago
4
NotImplementedError: "intersectBed" does not appear to be installed or on the path, so this method is disabled. Please install a more recent version of BEDTools and re-import to use this method.
#361
stanleyjs
closed
2 years ago
7
Move to MIT license, v0.9 (fix #286)
#360
daler
closed
2 years ago
0
Fix 355
#359
daler
closed
2 years ago
0
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