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Hi, nice paper and thanks for sharing your code and data publicly!
I have a question about controlling for batch effect.
In `seurat_integration.R`, after you run `IntegrateData()`, you perform d…
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Trying to use GSEA function. My input is a .rnk file of log2 genes (all genes, ~ to what is done GSEA Java-based link) and a gmt file for pathways.
```
GSEA(input.ds = system.file('extdata', 'test…
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## methylation distribution on read
I want to analyze the RNA m6A modification. I selected m6A_DRACH model when dorado basecaller.
Then I use modkit for downstream analysis.
`modkit pileup $bam \
…
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Because... Why not? If we assume that integrals are working, we can solve some trivial cases. For example, consider first order linear differential equation:
`y' + y*f(x) = g(x)`
first we compute `e^(…
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Hey,
Great work! Very exciting stuff.
Is there code that demonstrates how data/~.csv files were converted to the example_data.json ?
and for how you calculated confidence intervals?
Thank…
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Hello, Thank you for providing such a fantastic tool. I have a question.I now have a mixed single-cell sample consisting of four female mice and four male mice. I attempted to split it into eight samp…
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``` bash
Writing differentially expressed genes list to 0-vs-6-hour.changed.csv
Got sample spec: 5 from condition 1, 5 from condition 2
Loading differentially expressed gene names from 0-vs-6-hour.cha…
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We have two dataset to compare TEST and WT.
We have various cell types including A, B and C.
I was wondering whether it would be possible to have tables for A, B and C showing which pathways ar…
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First of all, the paragraph is well-written and clearly engaging. If I had one more thing to add, I would want to highlight the importance of multiomics studies. Why is it better to corroborate findin…
YPARK updated
2 years ago
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Spawned from #3093
```
`imPDRC` exposes ill-typed expressions!
- Inferred type `Boolean` does not match expected type `Rational`
- Associative arithmetic operation expects all operands to b…